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Sourcecode: cdk version File versions  Download package

boolean org::openscience::cdk::interfaces::IChemObject::getFlag ( int  flag_type ) [inherited]

Returns the value of some flag.

Parameters:
flag_typeFlag to retrieve the value of
Returns:
true if the flag flag_type is set
See also:
setFlag

Implemented in org::openscience::cdk::ChemObject, org::openscience::cdk::debug::DebugAminoAcid, org::openscience::cdk::debug::DebugAtom, org::openscience::cdk::debug::DebugAtomContainer, org::openscience::cdk::debug::DebugAtomContainerSet, org::openscience::cdk::debug::DebugAtomType, org::openscience::cdk::debug::DebugBioPolymer, org::openscience::cdk::debug::DebugBond, org::openscience::cdk::debug::DebugChemFile, org::openscience::cdk::debug::DebugChemModel, org::openscience::cdk::debug::DebugChemObject, org::openscience::cdk::debug::DebugChemSequence, org::openscience::cdk::debug::DebugCrystal, org::openscience::cdk::debug::DebugElectronContainer, org::openscience::cdk::debug::DebugElement, org::openscience::cdk::debug::DebugFragmentAtom, org::openscience::cdk::debug::DebugIsotope, org::openscience::cdk::debug::DebugLonePair, org::openscience::cdk::debug::DebugMapping, org::openscience::cdk::debug::DebugMolecule, org::openscience::cdk::debug::DebugMoleculeSet, org::openscience::cdk::debug::DebugMonomer, org::openscience::cdk::debug::DebugPolymer, org::openscience::cdk::debug::DebugPseudoAtom, org::openscience::cdk::debug::DebugReaction, org::openscience::cdk::debug::DebugReactionScheme, org::openscience::cdk::debug::DebugReactionSet, org::openscience::cdk::debug::DebugRing, org::openscience::cdk::debug::DebugSingleElectron, org::openscience::cdk::debug::DebugStrand, and org::openscience::cdk::isomorphism::matchers::smarts::LogicalOperatorAtom.

Referenced by org::openscience::cdk::tools::GenerateFragments::addPathFragments(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::allHeavyAtomsPlaced(), org::openscience::cdk::layout::AtomPlacer::allPlaced(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::assignGasteigerPiPartialCharges(), org::openscience::cdk::tools::HOSECodeGenerator::breadthFirstSearch(), org::openscience::cdk::qsar::descriptors::molecular::LongestAliphaticChainDescriptor::breadthFirstSearch(), org::openscience::cdk::qsar::descriptors::molecular::LargestPiSystemDescriptor::breadthFirstSearch(), org::openscience::cdk::qsar::descriptors::molecular::LargestChainDescriptor::breadthFirstSearch(), org::openscience::cdk::layout::AtomPlacer::breadthFirstSearch(), org::openscience::cdk::graph::PathTools::breadthFirstSearch(), org::openscience::cdk::graph::PathTools::breadthFirstTargetSearch(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::molecular::LongestAliphaticChainDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::molecular::LargestChainDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::molecular::AromaticBondsCountDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::molecular::AromaticAtomsCountDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::atomic::IsProtonInAromaticSystemDescriptor::calculate(), org::openscience::cdk::tools::SaturationChecker::calculateNumberOfImplicitHydrogens(), org::openscience::cdk::modeling::builder3d::ModelBuilder3D::checkAllRingAtomsHasCoordinates(), org::openscience::cdk::graph::invariant::ConjugatedPiSystemsDetector::checkAtom(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createAnyAtomAnyBondContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createAnyAtomContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createAnyAtomForPseudoAtomQueryContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createBasicQueryContainer(), org::openscience::cdk::smiles::SmilesGenerator::createDFSTree(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createSymbolAndChargeQueryContainer(), org::openscience::cdk::graph::PathTools::depthFirstTargetSearch(), org::openscience::cdk::graph::invariant::ConjugatedPiSystemsDetector::detect(), org::openscience::cdk::atomtype::EStateAtomTypeMatcher::findMatchingAtomType(), org::openscience::cdk::inchi::InChIGenerator::generateInchiFromCDKAtomContainer(), org::openscience::cdk::tools::GenerateFragments::generateMurckoFragments(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getAllPlacedAtoms(), org::openscience::cdk::geometry::GeometryTools::getBondLengthRMSD(), org::openscience::cdk::fingerprint::Fingerprinter::getBondSymbol(), org::openscience::cdk::fingerprint::MACCSFingerprinter::getFingerprint(), org::openscience::cdk::isomorphism::matchers::smarts::LogicalOperatorAtom::getFlag(), org::openscience::cdk::charges::Polarizability::getKJPolarizabilityFactor(), org::openscience::cdk::layout::StructureDiagramGenerator::getNextAtomWithAliphaticUnplacedNeigbors(), org::openscience::cdk::layout::StructureDiagramGenerator::getNextBondWithUnplacedRingAtom(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getNextPlacedHeavyAtomWithUnplacedAliphaticNeighbour(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getNextPlacedHeavyAtomWithUnplacedRingNeighbour(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getNextUnplacedHeavyAtomWithAliphaticPlacedNeighbour(), org::openscience::cdk::layout::StructureDiagramGenerator::getPlacedAtoms(), org::openscience::cdk::layout::AtomPlacer::getPlacedAtoms(), org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D::getPlacedAtomsInAtomContainer(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getPlacedHeavyAtom(), org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D::getPlacedHeavyAtomInAtomContainer(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getPlacedHeavyAtoms(), org::openscience::cdk::isomorphism::matchers::smarts::TotalRingConnectionAtom::getRC(), org::openscience::cdk::layout::StructureDiagramGenerator::getRingAtom(), org::openscience::cdk::tools::HOSECodeGenerator::getSphereCode(), org::openscience::cdk::layout::StructureDiagramGenerator::getUnplacedAtoms(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getUnplacedRingHeavyAtom(), org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D::getUnsetAtomsInAtomContainer(), org::openscience::cdk::layout::AtomPlacer::getWeightNumbers(), org::openscience::cdk::smiles::smarts::SMARTSQueryTool::initializeMolecule(), org::openscience::cdk::reaction::type::TautomerizationReaction::initiate(), org::openscience::cdk::reaction::type::SharingLonePairReaction::initiate(), org::openscience::cdk::reaction::type::SharingChargeSBReaction::initiate(), org::openscience::cdk::reaction::type::SharingChargeDBReaction::initiate(), org::openscience::cdk::reaction::type::SharingAnionReaction::initiate(), org::openscience::cdk::reaction::type::RearrangementRadicalReaction::initiate(), org::openscience::cdk::reaction::type::RearrangementLonePairReaction::initiate(), org::openscience::cdk::reaction::type::RearrangementCationReaction::initiate(), org::openscience::cdk::reaction::type::RearrangementAnionReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteRrGammaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteRrDeltaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteRrBetaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteRrAlphaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteInitiationReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteInitiationHReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteHrGammaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteHrDeltaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteHrBetaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteHrAlphaReaction::initiate(), org::openscience::cdk::reaction::type::RadicalChargeSiteInitiationReaction::initiate(), org::openscience::cdk::reaction::type::RadicalChargeSiteInitiationHReaction::initiate(), org::openscience::cdk::reaction::type::HyperconjugationReaction::initiate(), org::openscience::cdk::reaction::type::HomolyticCleavageReaction::initiate(), org::openscience::cdk::reaction::type::HeterolyticCleavageSBReaction::initiate(), org::openscience::cdk::reaction::type::HeterolyticCleavagePBReaction::initiate(), org::openscience::cdk::reaction::type::ElectronImpactSDBReaction::initiate(), org::openscience::cdk::reaction::type::ElectronImpactPDBReaction::initiate(), org::openscience::cdk::reaction::type::ElectronImpactNBEReaction::initiate(), org::openscience::cdk::reaction::type::CarbonylEliminationReaction::initiate(), org::openscience::cdk::reaction::type::AdductionSodiumLPReaction::initiate(), org::openscience::cdk::reaction::type::AdductionProtonPBReaction::initiate(), org::openscience::cdk::reaction::type::AdductionProtonLPReaction::initiate(), org::openscience::cdk::aromaticity::AromaticityCalculator::isAromatic(), org::openscience::cdk::aromaticity::CDKHueckelAromaticityDetector::isRingSystemSproutedWithNonRingDoubleBonds(), org::openscience::cdk::smiles::SmilesGenerator::isValidDoubleBondConfiguration(), 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org::openscience::cdk::modeling::builder3d::ModelBuilder3D::translateStructure(), and org::openscience::cdk::io::HINWriter::writeMolecule().


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