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IAtomContainer org::openscience::cdk::interfaces::IChemObjectBuilder::newAtomContainer (  )

Constructs an empty IAtomContainer.

Returns:
IAtomContainer implementation defined for this IChemObjectBuilder

Implemented in org::openscience::cdk::debug::DebugChemObjectBuilder, org::openscience::cdk::DefaultChemObjectBuilder, and org::openscience::cdk::nonotify::NoNotificationChemObjectBuilder.

Referenced by org::openscience::cdk::tools::GenerateFragments::addPathFragments(), org::openscience::cdk::ringsearch::RingPartitioner::convertToAtomContainer(), org::openscience::cdk::graph::invariant::ConjugatedPiSystemsDetector::detect(), org::openscience::cdk::structgen::stochastic::operator::CrossoverMachine::doCrossover(), org::openscience::cdk::ringsearch::AllRingsFinder::findAllRingsInIsolatedRingSystem(), org::openscience::cdk::tools::GenerateFragments::generateMurckoFragments(), org::openscience::cdk::tools::manipulator::RingSetManipulator::getAllInOneContainer(), org::openscience::cdk::tools::manipulator::MolecularFormulaManipulator::getAtomContainer(), org::openscience::cdk::tools::StructureResonanceGenerator::getContainers(), org::openscience::cdk::graph::SpanningTree::getCyclicFragmentsContainer(), org::openscience::cdk::layout::AtomPlacer::getInitialLongestChain(), org::openscience::cdk::tools::manipulator::AtomContainerManipulator::getIntersection(), org::openscience::cdk::layout::AtomPlacer::getLongestUnplacedChain(), org::openscience::cdk::layout::TemplateHandler::getMappedSubstructures(), org::openscience::cdk::layout::StructureDiagramGenerator::getPlacedAtoms(), org::openscience::cdk::layout::AtomPlacer::getPlacedAtoms(), org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D::getPlacedAtomsInAtomContainer(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getPlacedHeavyAtoms(), org::openscience::cdk::charges::Polarizability::getPolarizabilitiyFactorForAtom(), org::openscience::cdk::layout::StructureDiagramGenerator::getUnplacedAtoms(), org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D::getUnsetAtomsInAtomContainer(), org::openscience::cdk::graph::ConnectivityChecker::isConnected(), org::openscience::cdk::modeling::builder3d::ModelBuilder3D::layoutMolecule(), org::openscience::cdk::layout::StructureDiagramGenerator::layoutNextRingSystem(), org::openscience::cdk::graph::ConnectivityChecker::partitionIntoMolecules(), org::openscience::cdk::layout::StructureDiagramGenerator::placeFirstBond(), org::openscience::cdk::modeling::builder3d::ModelBuilder3D::placeLinearChains3D(), org::openscience::cdk::layout::RingPlacer::placeRingSubstituents(), org::openscience::cdk::isomorphism::UniversalIsomorphismTester::project(), org::openscience::cdk::io::PMPReader::readChemFile(), org::openscience::cdk::io::Gaussian03Reader::readCoordinates(), org::openscience::cdk::modeling::builder3d::ModelBuilder3D::searchAndPlaceBranches(), org::openscience::cdk::modeling::builder3d::ModelBuilder3D::setBranchAtom(), and org::openscience::cdk::io::iterator::event::EventCMLHandler::startObject().

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