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Iterable<IBond> org::openscience::cdk::interfaces::IAtomContainer::bonds (  ) [inherited]

Returns an Iterable for looping over all bonds in this container.

Returns:
An Iterable with the bonds in this container

Implemented in org::openscience::cdk::AtomContainer, org::openscience::cdk::debug::DebugAminoAcid, org::openscience::cdk::debug::DebugAtomContainer, org::openscience::cdk::debug::DebugBioPolymer, org::openscience::cdk::debug::DebugCrystal, org::openscience::cdk::debug::DebugMolecule, org::openscience::cdk::debug::DebugMonomer, org::openscience::cdk::debug::DebugPolymer, org::openscience::cdk::debug::DebugRing, and org::openscience::cdk::debug::DebugStrand.

Referenced by org::openscience::cdk::qsar::descriptors::molecular::AromaticBondsCountDescriptor::calculate(), org::openscience::cdk::templates::AminoAcids::createAAs(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createAnyAtomAnyBondContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createAnyAtomContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createAnyAtomForPseudoAtomQueryContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createBasicQueryContainer(), org::openscience::cdk::tools::IDCreator::createIDsForAtomContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createSymbolAndBondOrderQueryContainer(), org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator::createSymbolAndChargeQueryContainer(), org::openscience::cdk::structgen::stochastic::operator::CrossoverMachine::doCrossover(), org::openscience::cdk::tools::StructureResonanceGenerator::existAC(), org::openscience::cdk::inchi::InChIGenerator::generateInchiFromCDKAtomContainer(), org::openscience::cdk::geometry::GeometryTools::getBondLengthAverage(), org::openscience::cdk::geometry::GeometryTools::getBondLengthAverage3D(), org::openscience::cdk::geometry::GeometryTools::getClosestBond(), org::openscience::cdk::tools::IonizationPotentialTool::getDoubleBondNumber(), org::openscience::cdk::fingerprint::MACCSFingerprinter::getFingerprint(), org::openscience::cdk::layout::StructureDiagramGenerator::getNextBondWithUnplacedRingAtom(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getNextPlacedHeavyAtomWithUnplacedAliphaticNeighbour(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getNextPlacedHeavyAtomWithUnplacedRingNeighbour(), org::openscience::cdk::modeling::builder3d::AtomPlacer3D::getNextUnplacedHeavyAtomWithAliphaticPlacedNeighbour(), org::openscience::cdk::geometry::GeometryTools::getNormalizationFactor(), org::openscience::cdk::tools::features::MoleculeFeaturesTool::hasGraphRepresentation(), org::openscience::cdk::reaction::type::PiBondingMovementReaction::initiate(), org::openscience::cdk::reaction::type::HomolyticCleavageReaction::initiate(), org::openscience::cdk::reaction::type::HeterolyticCleavageSBReaction::initiate(), org::openscience::cdk::reaction::type::HeterolyticCleavagePBReaction::initiate(), org::openscience::cdk::reaction::type::ElectronImpactSDBReaction::initiate(), org::openscience::cdk::reaction::type::ElectronImpactPDBReaction::initiate(), org::openscience::cdk::reaction::type::AdductionProtonPBReaction::initiate(), org::openscience::cdk::ringsearch::AllRingsFinder::initPathGraph(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::removingFlagsAromaticity(), org::openscience::cdk::tools::manipulator::RingSetManipulator::ringAlreadyInSet(), org::openscience::cdk::reaction::type::PiBondingMovementReaction::setActiveCenters(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::setFlags(), org::openscience::cdk::tools::SaturationChecker::unsaturate(), org::openscience::cdk::tools::SaturationChecker::unsaturateBonds(), and org::openscience::cdk::io::HINWriter::writeMolecule().

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