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IBond org::openscience::cdk::interfaces::IAtomContainer::getBond ( int  number ) [inherited]

Get the bond at position number in [0,..].

Parameters:
numberThe position of the bond to be retrieved.
Returns:
The bond number

Implemented in org::openscience::cdk::AtomContainer, org::openscience::cdk::debug::DebugAminoAcid, org::openscience::cdk::debug::DebugAtomContainer, org::openscience::cdk::debug::DebugBioPolymer, org::openscience::cdk::debug::DebugCrystal, org::openscience::cdk::debug::DebugMolecule, org::openscience::cdk::debug::DebugMonomer, org::openscience::cdk::debug::DebugPolymer, org::openscience::cdk::debug::DebugRing, and org::openscience::cdk::debug::DebugStrand.

Referenced by org::openscience::cdk::AtomContainer::add(), org::openscience::cdk::tools::GenerateFragments::addFragmentBonds(), org::openscience::cdk::tools::GenerateFragments::addFragments(), org::openscience::cdk::tools::GenerateFragments::addPathFragments(), org::openscience::cdk::AtomContainer::AtomContainer(), org::openscience::cdk::graph::rebond::RebondTool::bondAtom(), org::openscience::cdk::tools::HOSECodeGenerator::breadthFirstSearch(), org::openscience::cdk::qsar::descriptors::bond::BondSigmaElectronegativityDescriptor::calculate(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::cleanFlagReactiveCenter(), org::openscience::cdk::ringsearch::RingPartitioner::convertToAtomContainer(), org::openscience::cdk::tools::manipulator::AtomContainerManipulator::createAllCarbonAllSingleNonAromaticBondAtomContainer(), org::openscience::cdk::qsar::descriptors::molecular::ChiIndexUtils::deltavPhosphorous(), org::openscience::cdk::qsar::descriptors::molecular::ChiIndexUtils::deltavSulphur(), org::openscience::cdk::ringsearch::AllRingsFinder::detectRings(), org::openscience::cdk::fingerprint::Fingerprinter::findPathes(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getAtomTypeXCount(), org::openscience::cdk::layout::OverlapResolver::getBondOverlapScore(), org::openscience::cdk::tools::StructureResonanceGenerator::getContainers(), org::openscience::cdk::graph::SpanningTree::getCyclicFragmentsContainer(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getDoubleBondedCarbonsCount(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getDoubleBondedNitrogenCount(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getDoubleBondedOxygenCount(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getDoubleBondedSulfurCount(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::getHyperconjugationInteractions(), org::openscience::cdk::pharmacophore::PharmacophoreMatcher::getMatchingPharmacophoreBonds(), org::openscience::cdk::layout::StructureDiagramGenerator::getNextAtomWithAliphaticUnplacedNeigbors(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getPresenceOfCarbonil(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getPresenceOfHydroxy(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::getPresenceOfNitro(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::getTopologicalFactors(), org::openscience::cdk::qsar::descriptors::molecular::ChiIndexUtils::getUniqueBondSubgraphs(), org::openscience::cdk::graph::SpanningTree::identifyBonds(), org::openscience::cdk::reaction::type::PiBondingMovementReaction::initiate(), org::openscience::cdk::reaction::mechanism::TautomerizationMechanism::initiate(), org::openscience::cdk::reaction::mechanism::SharingElectronMechanism::initiate(), org::openscience::cdk::reaction::mechanism::RemovingSEofBMechanism::initiate(), org::openscience::cdk::reaction::mechanism::RearrangementChargeMechanism::initiate(), org::openscience::cdk::reaction::mechanism::RadicalSiteRearrangementMechanism::initiate(), org::openscience::cdk::reaction::mechanism::RadicalSiteIonizationMechanism::initiate(), org::openscience::cdk::reaction::mechanism::HomolyticCleavageMechanism::initiate(), org::openscience::cdk::reaction::mechanism::HeterolyticCleavageMechanism::initiate(), org::openscience::cdk::reaction::mechanism::AdductionPBMechanism::initiate(), org::openscience::cdk::isomorphism::matchers::smarts::RecursiveSmartsAtom::initilizeBitSets(), org::openscience::cdk::smiles::SmilesGenerator::isEndOfDoubleBond(), org::openscience::cdk::geometry::BondTools::isEndOfDoubleBond(), org::openscience::cdk::smiles::SmilesGenerator::isStartOfDoubleBond(), org::openscience::cdk::geometry::BondTools::isStartOfDoubleBond(), org::openscience::cdk::layout::StructureDiagramGenerator::layoutRingSet(), org::openscience::cdk::isomorphism::UniversalIsomorphismTester::makeAtomsMapOfBondsMap(), org::openscience::cdk::structgen::RandomGenerator::mutate(), org::openscience::cdk::tools::HOSECodeGenerator::nextSphere(), org::openscience::cdk::tools::Normalizer::normalize(), org::openscience::cdk::smiles::SmilesGenerator::parseAtom(), org::openscience::cdk::smiles::SmilesGenerator::parseBond(), org::openscience::cdk::smiles::SmilesGenerator::parseChain(), org::openscience::cdk::layout::RingPlacer::placeBridgedRing(), org::openscience::cdk::layout::RingPlacer::placeFusedRing(), org::openscience::cdk::layout::AtomPlacer::placeLinearChain(), org::openscience::cdk::isomorphism::UniversalIsomorphismTester::project(), org::openscience::cdk::smiles::DeduceBondSystemTool::recoverRingSystem(), org::openscience::cdk::tools::manipulator::AtomContainerManipulator::removeHydrogens(), org::openscience::cdk::structgen::VicinitySampler::sample(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::setAntiFlags(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::setFlags(), and org::openscience::cdk::smiles::DeduceBondSystemTool::storeRingSystem().


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