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void org::openscience::cdk::interfaces::IAtomContainer::addBond ( IBond  bond ) [inherited]

Adds a Bond to this AtomContainer.

Parameters:
bondThe bond to added to this container

Implemented in org::openscience::cdk::AtomContainer, org::openscience::cdk::debug::DebugAminoAcid, org::openscience::cdk::debug::DebugAtomContainer, org::openscience::cdk::debug::DebugBioPolymer, org::openscience::cdk::debug::DebugCrystal, org::openscience::cdk::debug::DebugMolecule, org::openscience::cdk::debug::DebugMonomer, org::openscience::cdk::debug::DebugPolymer, org::openscience::cdk::debug::DebugRing, org::openscience::cdk::debug::DebugStrand, and org::openscience::cdk::isomorphism::matchers::QueryAtomContainer.

Referenced by org::openscience::cdk::tools::GenerateFragments::addFragmentBonds(), org::openscience::cdk::graph::rebond::RebondTool::bondAtom(), org::openscience::cdk::AtomContainer::clone(), org::openscience::cdk::ringsearch::RingPartitioner::convertToAtomContainer(), org::openscience::cdk::graph::invariant::ConjugatedPiSystemsDetector::detect(), org::openscience::cdk::ringsearch::AllRingsFinder::detectRings(), org::openscience::cdk::io::iterator::event::EventCMLHandler::endObject(), org::openscience::cdk::structgen::SingleStructureRandomGenerator::generate(), org::openscience::cdk::inchi::InChIToStructure::generateAtomContainerFromInchi(), org::openscience::cdk::tools::StructureResonanceGenerator::getContainers(), org::openscience::cdk::graph::SpanningTree::getCyclicFragmentsContainer(), org::openscience::cdk::layout::TemplateHandler::getMappedSubstructures(), org::openscience::cdk::smiles::SmilesParser::handleRing(), org::openscience::cdk::reaction::mechanism::TautomerizationMechanism::initiate(), org::openscience::cdk::reaction::mechanism::RadicalSiteRearrangementMechanism::initiate(), org::openscience::cdk::reaction::mechanism::AdductionPBMechanism::initiate(), org::openscience::cdk::reaction::mechanism::AdductionLPMechanism::initiate(), org::openscience::cdk::graph::ConnectivityChecker::isConnected(), org::openscience::cdk::templates::MoleculeFactory::makeAdenine(), org::openscience::cdk::structgen::RandomGenerator::mutate(), org::openscience::cdk::smiles::SmilesParser::parseString(), org::openscience::cdk::graph::ConnectivityChecker::partitionIntoMolecules(), org::openscience::cdk::layout::StructureDiagramGenerator::placeFirstBond(), org::openscience::cdk::io::inchi::INChIContentProcessorTool::processConnections(), org::openscience::cdk::isomorphism::UniversalIsomorphismTester::project(), org::openscience::cdk::io::MDLV3000Reader::readBondBlock(), org::openscience::cdk::io::HINReader::readChemFile(), and org::openscience::cdk::smiles::DeduceBondSystemTool::recoverRingSystem().

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