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int org::openscience::cdk::debug::DebugBioPolymer::getAtomNumber ( IAtom  atom ) [inline]

Returns the position of a given atom in the atoms array. It returns -1 if the atom does not exist.

atomThe atom to be sought
The Position of the atom in the atoms array in [0,..].

Reimplemented from org::openscience::cdk::AtomContainer.

Definition at line 153 of file DebugBioPolymer.java.

References org::openscience::cdk::tools::LoggingTool::debug().

            logger.debug("Getting atom number: ", atom);
            return super.getAtomNumber(atom);

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