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Public Member Functions

org::openscience::cdk::interfaces::IMonomer Interface Reference

Inheritance diagram for org::openscience::cdk::interfaces::IMonomer:
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List of all members.

Public Member Functions

void add (IAtomContainer atomContainer)
void addAtom (IAtom atom)
void addAtomParity (IAtomParity parity)
void addBond (IBond bond)
void addBond (int atom1, int atom2, IBond.Order order, int stereo)
void addBond (int atom1, int atom2, IBond.Order order)
void addElectronContainer (IElectronContainer electronContainer)
void addListener (IChemObjectListener col)
void addLonePair (ILonePair lonePair)
void addLonePair (int atomID)
void addSingleElectron (ISingleElectron singleElectron)
void addSingleElectron (int atomID)
Iterable< IAtomatoms ()
Iterable< IBondbonds ()
Object clone () throws CloneNotSupportedException
boolean contains (IAtom atom)
boolean contains (ILonePair lonePair)
boolean contains (ISingleElectron singleElectron)
boolean contains (IBond bond)
boolean contains (IElectronContainer electronContainer)
Iterable< IElectronContainerelectronContainers ()
IAtom getAtom (int number)
int getAtomCount ()
int getAtomNumber (IAtom atom)
IAtomParity getAtomParity (IAtom atom)
IBond getBond (int number)
IBond getBond (IAtom atom1, IAtom atom2)
int getBondCount ()
int getBondNumber (IAtom atom1, IAtom atom2)
int getBondNumber (IBond bond)
double getBondOrderSum (IAtom atom)
IChemObjectBuilder getBuilder ()
int getConnectedAtomsCount (IAtom atom)
List< IAtomgetConnectedAtomsList (IAtom atom)
int getConnectedBondsCount (IAtom atom)
int getConnectedBondsCount (int atomnumber)
List< IBondgetConnectedBondsList (IAtom atom)
List< IElectronContainergetConnectedElectronContainersList (IAtom atom)
int getConnectedLonePairsCount (IAtom atom)
List< ILonePairgetConnectedLonePairsList (IAtom atom)
int getConnectedSingleElectronsCount (IAtom atom)
List< ISingleElectrongetConnectedSingleElectronsList (IAtom atom)
IElectronContainer getElectronContainer (int number)
int getElectronContainerCount ()
IAtom getFirstAtom ()
boolean getFlag (int flag_type)
boolean[] getFlags ()
String getID ()
IAtom getLastAtom ()
int getListenerCount ()
ILonePair getLonePair (int number)
int getLonePairCount ()
int getLonePairNumber (ILonePair lonePair)
Order getMaximumBondOrder (IAtom atom)
Order getMinimumBondOrder (IAtom atom)
String getMonomerName ()
String getMonomerType ()
boolean getNotification ()
Map< Object, Object > getProperties ()
Object getProperty (Object description)
ISingleElectron getSingleElectron (int number)
int getSingleElectronCount ()
int getSingleElectronNumber (ISingleElectron singleElectron)
Iterable< ILonePairlonePairs ()
void notifyChanged ()
void notifyChanged (IChemObjectChangeEvent evt)
void remove (IAtomContainer atomContainer)
void removeAllBonds ()
void removeAllElectronContainers ()
void removeAllElements ()
void removeAtom (int position)
void removeAtom (IAtom atom)
void removeAtomAndConnectedElectronContainers (IAtom atom)
IBond removeBond (int position)
void removeBond (IBond bond)
IBond removeBond (IAtom atom1, IAtom atom2)
IElectronContainer removeElectronContainer (int position)
void removeElectronContainer (IElectronContainer electronContainer)
void removeListener (IChemObjectListener col)
void removeLonePair (ILonePair lonePair)
ILonePair removeLonePair (int position)
void removeProperty (Object description)
ISingleElectron removeSingleElectron (int position)
void removeSingleElectron (ISingleElectron singleElectron)
void setAtom (int number, IAtom atom)
void setAtoms (IAtom[] atoms)
void setBonds (IBond[] bonds)
void setFlag (int flag_type, boolean flag_value)
void setFlags (boolean[] flagsNew)
void setID (String identifier)
void setMonomerName (String cMonomerName)
void setMonomerType (String cMonomerType)
void setNotification (boolean bool)
void setProperties (Map< Object, Object > properties)
void setProperty (Object description, Object property)
Iterable< ISingleElectronsingleElectrons ()
void stateChanged (IChemObjectChangeEvent event)
String toString ()

Detailed Description

A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.

.module interfaces .githash

Author:
Edgar Luttmann <edgar@uni-paderborn.de> .created 2001-08-06

.keyword monomer

Definition at line 42 of file IMonomer.java.


The documentation for this interface was generated from the following file:

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