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ConvertToAction.java

/*
 *  $RCSfile$
 *  $Author: egonw $
 *  $Date: 2007-04-16 10:40:19 +0200 (Mon, 16 Apr 2007) $
 *  $Revision: 8201 $
 *
 *  Copyright (C) 2003-2007  The JChemPaint project
 *
 *  Contact: jchempaint-devel@lists.sf.net
 *
 *  This program is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU Lesser General Public License
 *  as published by the Free Software Foundation; either version 2.1
 *  of the License, or (at your option) any later version.
 *  All we ask is that proper credit is given for our work, which includes
 *  - but is not limited to - adding the above copyright notice to the beginning
 *  of your source code files, and to any copyright notice that you may distribute
 *  with programs based on this work.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU Lesser General Public License
 *  along with this program; if not, write to the Free Software
 *  Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
 */
package org.openscience.cdk.applications.jchempaint.action;

import java.awt.event.ActionEvent;

import org.openscience.cdk.Atom;
import org.openscience.cdk.interfaces.IAtomContainer;
import org.openscience.cdk.interfaces.IChemObject;
import org.openscience.cdk.EnzymeResidueLocator;
import org.openscience.cdk.PseudoAtom;
import org.openscience.cdk.applications.jchempaint.JChemPaintModel;
import org.openscience.cdk.tools.manipulator.AtomContainerManipulator;
import org.openscience.cdk.tools.manipulator.ChemModelManipulator;


/**
 * Triggers the conversion of an Atom to a residueLocator 
 * or other objects
 *
 * @cdk.module jchempaint
 * @author     steinbeck
 */
00050 public class ConvertToAction extends JCPAction
{

      private static final long serialVersionUID = 4239327873015560552L;

00055       public void actionPerformed(ActionEvent event)
      {
            logger.debug("Converting to: ", type);
            IChemObject object = getSource(event);
            JChemPaintModel jcpmodel = jcpPanel.getJChemPaintModel();
            org.openscience.cdk.interfaces.IChemModel model = jcpmodel.getChemModel();
            if (object != null)
            {
                  if (object instanceof Atom)
                  {
                        if (type.equals("atomToPseudoAtom"))
                        {
                              Atom atom = (Atom) object;
                              IAtomContainer relevantContainer = ChemModelManipulator.getRelevantAtomContainer(model, atom);
                              AtomContainerManipulator.replaceAtomByAtom(relevantContainer,
                                          atom, new PseudoAtom(atom));
                        } else if (type.equals("atomToEnzymeResidueLocator"))
                        {
                              Atom atom = (Atom) object;
                              IAtomContainer relevantContainer = ChemModelManipulator.getRelevantAtomContainer(model, atom);
                              AtomContainerManipulator.replaceAtomByAtom(relevantContainer,
                                          atom, new EnzymeResidueLocator(atom));
                        } else
                        {
                              logger.error("Unknown convertTo type!");
                        }
                  } else
                  {
                        logger.error("Object not an Atom! Cannot convert into a PseudoAtom!");
                  }
            } else
            {
                  logger.warn("Cannot convert a null object!");
            }
            jcpmodel.fireChange();
      }
}


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