Logo Search packages:      
Sourcecode: cdk version File versions

ExplicitConnectionAtom.java

/* $Revision: $ $Author: $ $Date: $ 
 *
 * Copyright (C) 2004-2007  The Chemistry Development Kit (CDK) project
 *
 * This library is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2.1 of the License, or (at your option) any later version.
 *
 * This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with this library; if not, write to the Free Software
 * Foundation, 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
 * (or see http://www.gnu.org/copyleft/lesser.html)
 */
package org.openscience.cdk.isomorphism.matchers.smarts;

import org.openscience.cdk.CDKConstants;
import org.openscience.cdk.interfaces.IAtom;

/**
 * This smarts atom matches any atom with a certain number of explicit
 * connections
 *
 * @author Dazhi Jiao
 * @cdk.created 2007-05-10
 * @cdk.module smarts
 * @cdk.keyword SMARTS 
 */
00034 public class ExplicitConnectionAtom extends SMARTSAtom {
00035       private static final long serialVersionUID = 7453671653627040279L;

      /**
       * Number of explicit connections
       */
00040       private int numOfConnection;

      /**
       * Creates a new instance
       *
       */
00046       public ExplicitConnectionAtom() {
            super();
      }

      /**
       * Creates a new instance
       *
       * @param connection
       */
00055       public ExplicitConnectionAtom(int connection) {
            super();
            this.numOfConnection = connection;
      }

      /* (non-Javadoc)
       * @see org.openscience.cdk.isomorphism.matchers.smarts.SMARTSAtom#matches(org.openscience.cdk.interfaces.IAtom)
       */
00063       public boolean matches(IAtom atom) {
            int conn = ((Integer)atom.getProperty(CDKConstants.TOTAL_CONNECTIONS)).intValue() -
            atom.getHydrogenCount();
            return numOfConnection == conn;
      }

      /**
       * Returns number of explicit connections
       * 
       * @return
       */
00074       public int getNumOfConnection() {
            return numOfConnection;
      }

      /**
       * Sets number of explicit connections
       * 
       * @param numOfConnection
       */
00083       public void setNumOfConnection(int numOfConnection) {
            this.numOfConnection = numOfConnection;
      }
}

Generated by  Doxygen 1.6.0   Back to index