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Residue.java

/* $Revision: 7636 $ $Author: ospjuth $ $Date: 2007-01-04 17:46:10 +0000 (Thu, 04 Jan 2007) $
 *
 * Copyright (C) 2007  Ola Spjuth <ospjuth@users.sf.net>
 * 
 * Contact: cdk-devel@lists.sourceforge.net
 * 
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation; either version 2.1
 * of the License, or (at your option) any later version.
 * All we ask is that proper credit is given for our work, which includes
 * - but is not limited to - adding the above copyright notice to the beginning
 * of your source code files, and to any copyright notice that you may distribute
 * with programs based on this work.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License for more details.
 * 
 * You should have received a copy of the GNU Lesser General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
 */
package org.openscience.cdk.libio.md;

import org.openscience.cdk.AtomContainer;
import org.openscience.cdk.interfaces.IAtomContainer;

/**
 * A residue is a named, numbered collection of atoms in an MDMolecule.
 * 
 * Residues are used to partition molecules in distinct pieces.
 * 
 * @author ola
 * @cdk.module libiomd
 */
00038 public class Residue extends AtomContainer{

00040       private static final long serialVersionUID = 6548353601272976798L;

      private int number;
      private String name;
      private MDMolecule parentMolecule;

      /**
       * Empty constructor
       */
00049       public Residue(){
      }
      
      /**
       * Constructor to create a Residue based on an AC, a number, and a MDMolecule
       * @param container
       * @param number
       * @param molecule
       */
00058       public Residue(IAtomContainer container, int number, MDMolecule parentMolecule) {
            super(container);
            this.number=number;
            this.parentMolecule=parentMolecule;
      }

      
      public String getName() {
            return name;
      }

      public void setName(String name) {
            this.name = name;
      }

      public int getNumber() {
            return number;
      }

      public void setNumber(int number) {
            this.number = number;
      }

      public MDMolecule getParentMolecule() {
            return parentMolecule;
      }

      public void setParentMolecule(MDMolecule parentMolecule) {
            this.parentMolecule = parentMolecule;
      }

}

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