cdk

o*Deprecated List

o+Class List

|o*org::openscience::cdk::io::formats::ABINITFormat

|o*org::openscience::cdk::applications::jchempaint::action::AboutAction

|o*org::openscience::cdk::applications::jchempaint::dialogs::AboutDialog

|o*org::openscience::cdk::qsar::AbstractAtomicDescriptor

|o*org::openscience::cdk::qsar::AbstractBondDescriptor

|o*org::openscience::cdk::controller::AbstractController2D

|o*org::openscience::cdk::renderer::AbstractRenderer2D

|o*org::openscience::cdk::validate::AbstractValidator

|o*org::openscience::cdk::io::formats::Aces2Format

|o*org::openscience::cdk::applications::undoredo::AddAtomsAndBondsEdit

|o*org::openscience::cdk::applications::undoredo::AddFuncGroupEdit

|o*org::openscience::cdk::applications::jchempaint::action::AddHydrogenAction

|o*org::openscience::cdk::applications::undoredo::AddHydrogenEdit

|o*org::openscience::cdk::io::formats::ADFFormat

|o*org::openscience::cdk::graph::matrix::AdjacencyMatrix

|o*org::openscience::cdk::applications::jchempaint::action::AdjustBondOrdersAction

|o*org::openscience::cdk::applications::undoredo::AdjustBondOrdersEdit

|o*org::openscience::cdk::io::formats::AlchemyFormat

|o*org::openscience::cdk::isomorphism::matchers::smarts::AliphaticAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::AliphaticSymbolAtom

|o*org::openscience::cdk::ringsearch::AllRingsFinder

|o*org::openscience::cdk::qsar::descriptors::molecular::ALOGP

|o*org::openscience::cdk::renderer::AlphaRenderer2D

|o*org::openscience::cdk::AminoAcid

|o*org::openscience::cdk::qsar::descriptors::molecular::AminoAcidCountDescriptor

|o*org::openscience::cdk::tools::manipulator::AminoAcidManipulator

|o*org::openscience::cdk::templates::AminoAcids

|o*org::openscience::cdk::modeling::forcefield::AngleBending

|o*org::openscience::cdk::math::qm::AngularMomentum

|o*org::openscience::cdk::isomorphism::matchers::smarts::AnyAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::AnyOrderQueryBond

|o*org::openscience::cdk::applications::APIVersionTester

|o*org::openscience::cdk::qsar::descriptors::molecular::APolDescriptor

|o*org::openscience::cdk::applications::jchempaint::applet::AppletCanvas

|o*org::openscience::cdk::isomorphism::matchers::smarts::AromaticAtom

|o*org::openscience::cdk::qsar::descriptors::molecular::AromaticAtomsCountDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::AromaticBondsCountDescriptor

|o*org::openscience::cdk::aromaticity::AromaticityCalculator

|o*org::openscience::cdk::isomorphism::matchers::smarts::AromaticQueryBond

|o*org::openscience::cdk::isomorphism::matchers::smarts::AromaticSymbolAtom

|o*org::openscience::cdk::renderer::Arrow

|o*org::openscience::cdk::renderer::ArrowRenderer2D

|o*org::openscience::cdk::Association

|o*org::openscience::cdk::Atom

|o*org::openscience::cdk::AtomContainer

|o*org::openscience::cdk::AtomContainer::AtomIterator

|o*org::openscience::cdk::AtomContainer::BondIterator

|o*org::openscience::cdk::AtomContainer::ElectronContainerIterator

|o*org::openscience::cdk::AtomContainer::LonePairIterator

|o*org::openscience::cdk::AtomContainer::SingleElectronIterator

|o*org::openscience::cdk::graph::AtomContainerAtomPermutor

|o*org::openscience::cdk::graph::AtomContainerBondPermutor

|o*org::openscience::cdk::tools::manipulator::AtomContainerComparator

|o*org::openscience::cdk::applications::swing::editor::AtomContainerEditor

|o*org::openscience::cdk::tools::manipulator::AtomContainerManipulator

|o*org::openscience::cdk::graph::AtomContainerPermutor

|o*org::openscience::cdk::AtomContainerSet

|o*org::openscience::cdk::AtomContainerSet::AtomContainerIterator

|o*org::openscience::cdk::tools::manipulator::AtomContainerSetManipulator

|o*org::openscience::cdk::qsar::descriptors::molecular::AtomCountDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::AtomDegreeDescriptor

|o*org::openscience::cdk::applications::swing::editor::AtomEditor

|o*org::openscience::cdk::qsar::descriptors::atomic::AtomHybridizationDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::AtomHybridizationVSEPRDescriptor

|o*org::openscience::cdk::isomorphism::matchers::smarts::AtomicNumberAtom

|o*org::openscience::cdk::applications::swing::AtomicTable

|o*org::openscience::cdk::AtomParity

|o*org::openscience::cdk::layout::AtomPlacer

|o*org::openscience::cdk::modeling::builder3d::AtomPlacer3D

|o*org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D

|o*org::openscience::cdk::geometry::AtomTools

|o*org::openscience::cdk::AtomType

|o*org::openscience::cdk::charges::AtomTypeCharges

|o*org::openscience::cdk::config::AtomTypeFactory

|o*org::openscience::cdk::config::atomtypes::AtomTypeHandler

|o*org::openscience::cdk::tools::manipulator::AtomTypeManipulator

|o*org::openscience::cdk::config::atomtypes::AtomTypeReader

|o*org::openscience::cdk::tools::AtomTypeTools

|o*org::openscience::cdk::qsar::descriptors::atomic::AtomValenceDescriptor

|o*org::openscience::cdk::iupac::parser::AttachedGroup

|o*org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorCharge

|o*org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorMass

|o*org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorPolarizability

|o*org::openscience::cdk::validate::BasicValidator

|o*org::openscience::cdk::qsar::descriptors::molecular::BCUTDescriptor

|o*org::openscience::cdk::graph::BFSShortestPath

|o*org::openscience::cdk::io::formats::BGFFormat

|o*net::sf::cdk::tools::bibtex::BibTeXMLEntry

|o*net::sf::cdk::tools::bibtex::BibTeXMLFile

|o*org::openscience::cdk::graph::BiconnectivityInspector

|o*org::openscience::cdk::BioPolymer

|o*org::openscience::cdk::Bond

|o*org::openscience::cdk::Bond::AtomsIterator

|o*org::openscience::cdk::applications::undoredo::BondChangeEdit

|o*org::openscience::cdk::qsar::descriptors::molecular::BondCountDescriptor

|o*org::openscience::cdk::applications::swing::editor::BondEditor

|o*org::openscience::cdk::tools::manipulator::BondManipulator

|o*org::openscience::cdk::qsar::descriptors::bond::BondPartialPiChargeDescriptor

|o*org::openscience::cdk::qsar::descriptors::bond::BondPartialSigmaChargeDescriptor

|o*org::openscience::cdk::qsar::descriptors::bond::BondPartialTChargeDescriptor

|o*org::openscience::cdk::qsar::descriptors::bond::BondSigmaElectronegativityDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::BondsToAtomDescriptor

|o*org::openscience::cdk::modeling::forcefield::BondStretching

|o*org::openscience::cdk::geometry::BondTools

|o*org::openscience::cdk::io::setting::BooleanIOSetting

|o*org::openscience::cdk::qsar::result::BooleanResult

|o*org::openscience::cdk::qsar::descriptors::molecular::BPolDescriptor

|o*org::openscience::cdk::isomorphism::matchers::smarts::BracketAtom

|o*org::openscience::cdk::reaction::type::BreakingBondReaction

|o*org::openscience::cdk::tools::BremserOneSphereHOSECodePredictor

|o*org::openscience::cdk::io::formats::BSFormat

|o*org::openscience::cdk::graph::rebond::Bspt

|o*org::openscience::cdk::io::formats::CacaoCartesianFormat

|o*org::openscience::cdk::io::formats::CacaoInternalFormat

|o*org::openscience::cdk::io::formats::CACheFormat

|o*org::openscience::cdk::graph::invariant::CanonicalLabeler

|o*org::openscience::cdk::qsar::descriptors::molecular::CarbonConnectivityOrderOneDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::CarbonConnectivityOrderZeroDescriptor

|o*org::openscience::cdk::reaction::type::CarbonylEliminationReaction

|o*org::openscience::cdk::index::CASNumber

|o*org::openscience::cdk::renderer::color::CDK2DAtomColors

|o*org::openscience::cdk::renderer::color::CDKAtomColors

|o*org::openscience::cdk::config::CDKBasedAtomTypeConfigurator

|o*net::sf::cdk::tools::doclets::CDKBugTaglet

|o*net::sf::cdk::tools::doclets::CDKCiteTaglet

|o*org::openscience::cdk::CDKConstants

|o*org::openscience::cdk::io::cml::CDKConvention

|o*org::openscience::cdk::dict::CDKDictionaryReferences

|o*net::sf::cdk::tools::doclets::CDKDictRefTaglet

|o*org::openscience::cdk::exception::CDKException

|o*net::sf::cdk::tools::doclets::CDKModuleTaglet

|o*org::openscience::cdk::applications::plugin::CDKPluginManager

|o*org::openscience::cdk::applications::plugin::CDKPluginManager::PluginDialogAction

|o*org::openscience::cdk::controller::CDKPopupMenu

|o*org::openscience::cdk::io::formats::CDKSourceCodeFormat

|o*org::openscience::cdk::io::CDKSourceCodeWriter

|o*org::openscience::cdk::tools::CDKUtilities

|o*org::openscience::cdk::validate::CDKValidator

|o*org::openscience::cdk::applications::jchempaint::action::ChangeAtomSymbolAction

|o*org::openscience::cdk::applications::undoredo::ChangeAtomSymbolEdit

|o*org::openscience::cdk::applications::undoredo::ChangeChargeEdit

|o*org::openscience::cdk::applications::undoredo::ChangeCoordsEdit

|o*org::openscience::cdk::applications::jchempaint::action::ChangeIsotopeAction

|o*org::openscience::cdk::applications::undoredo::ChangeIsotopeEdit

|o*org::openscience::cdk::libio::md::ChargeGroup

|o*org::openscience::cdk::io::formats::Chem3D_Cartesian_1Format

|o*org::openscience::cdk::io::formats::Chem3D_Cartesian_2Format

|o*org::openscience::cdk::applications::jchempaint::action::ChemAction

|o*org::openscience::cdk::io::formats::ChemDrawFormat

|o*org::openscience::cdk::ChemFile

|o*org::openscience::cdk::ChemFile::ChemSequenceIterator

|o*org::openscience::cdk::tools::manipulator::ChemFileManipulator

|o*org::openscience::cdk::structgen::stochastic::operator::ChemGraph

|o*org::openscience::cdk::ChemModel

|o*org::openscience::cdk::tools::manipulator::ChemModelManipulator

|o*org::openscience::cdk::ChemObject

|o*org::openscience::cdk::event::ChemObjectChangeEvent

|o*org::openscience::cdk::applications::swing::editor::ChemObjectEditor

|o*org::openscience::cdk::applications::jchempaint::dialogs::ChemObjectPropertyDialog

|o*org::openscience::cdk::applications::swing::ChemObjectPropertyEditorTableModel

|o*org::openscience::cdk::applications::swing::ChemObjectTree

|o*org::openscience::cdk::applications::swing::ChemObjectTreeNode

|o*org::openscience::cdk::ChemSequence

|o*org::openscience::cdk::ChemSequence::ChemModelIterator

|o*org::openscience::cdk::tools::manipulator::ChemSequenceManipulator

|o*org::openscience::cdk::io::formats::ChemtoolFormat

|o*org::openscience::cdk::qsar::descriptors::molecular::ChiChainDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::ChiClusterDescriptor

|o*org::openscience::cdk::qsar::ChiIndexUtils

|o*org::openscience::cdk::qsar::descriptors::molecular::ChiPathClusterDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::ChiPathDescriptor

|o*org::openscience::cdk::isomorphism::matchers::smarts::ChiralityAtom

|o*org::openscience::cdk::io::formats::CIFFormat

|o*org::openscience::cdk::io::CIFReader

|o*org::openscience::cdk::applications::jchempaint::action::CleanupAction

|o*org::openscience::cdk::applications::undoredo::CleanUpEdit

|o*org::openscience::cdk::applications::undoredo::ClearAllEdit

|o*org::openscience::cdk::reaction::type::CleavageBondMultiReaction

|o*org::openscience::cdk::reaction::type::CleavageBondReaction

|o*org::openscience::cdk::applications::jchempaint::action::CloseAction

|o*org::openscience::cdk::math::qm::ClosedShellJob

|o*org::openscience::cdk::io::cml::CMLCoreModule

|o*org::openscience::cdk::io::cml::CMLErrorHandler

|o*org::openscience::cdk::io::formats::CMLFormat

|o*org::openscience::cdk::io::cml::CMLHandler

|o*org::openscience::cdk::io::cml::CMLReactionModule

|o*org::openscience::cdk::io::CMLReader

|o*org::openscience::cdk::io::cml::CMLResolver

|o*org::openscience::cdk::io::formats::CMLRSSFormat

|o*org::openscience::cdk::io::cml::CMLStack

|o*org::openscience::cdk::io::CMLWriter

|o*org::openscience::cdk::qsar::model::R::CNNClassificationModel

|o*org::openscience::cdk::qsar::model::R::CNNClassificationModelFit

|o*org::openscience::cdk::qsar::model::R::CNNClassificationModelPredict

|o*org::openscience::cdk::qsar::model::R::CNNRegressionModel

|o*org::openscience::cdk::qsar::model::R2::CNNRegressionModel

|o*org::openscience::cdk::qsar::model::R::CNNRegressionModelFit

|o*org::openscience::cdk::qsar::model::R::CNNRegressionModelPredict

|o*org::openscience::cdk::qsar::model::R::CNNRegressionModelSummary

|o*org::openscience::cdk::isomorphism::matchers::smarts::ColumnAtom

|o*org::openscience::cdk::math::Complex

|o*org::openscience::cdk::graph::invariant::ConjugatedPiSystemsDetector

|o*org::openscience::cdk::modeling::forcefield::ConjugateGradientMethod

|o*org::openscience::cdk::isomorphism::matchers::smarts::ConnectionCountAtom

|o*org::openscience::cdk::graph::matrix::ConnectionMatrix

|o*org::openscience::cdk::graph::ConnectivityChecker

|o*org::openscience::cdk::controller::Controller2D

|o*org::openscience::cdk::controller::Controller2DModel

|o*org::openscience::cdk::applications::swing::editor::Controller2DModelEditor

|o*org::openscience::cdk::libio::cml::Convertor

|o*org::openscience::cdk::libio::biojava::Convertor

|o*org::openscience::cdk::applications::jchempaint::action::ConvertToAction

|o*org::openscience::cdk::applications::jchempaint::action::ConvertToPseudoAtomAction

|o*org::openscience::cdk::applications::undoredo::ConvertToPseudoAtomEdit

|o*org::openscience::cdk::applications::jchempaint::action::ConvertToRadicalAction

|o*org::openscience::cdk::applications::undoredo::ConvertToRadicalEdit

|o*org::openscience::cdk::applications::jchempaint::action::CopyPasteAction

|o*org::openscience::cdk::qsar::descriptors::atomic::CovalentRadiusDescriptor

|o*org::openscience::cdk::renderer::color::CPKAtomColors

|o*org::openscience::cdk::qsar::descriptors::molecular::CPSADescriptor

|o*org::openscience::cdk::applications::jchempaint::dialogs::CreateCoordinatesForFileDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::CreateCoordinatesForFileDialog::CreateAction

|o*org::openscience::cdk::applications::jchempaint::action::CreateInChIAction

|o*org::openscience::cdk::applications::jchempaint::action::CreateReactionAction

|o*org::openscience::cdk::applications::jchempaint::action::CreateSmilesAction

|o*org::openscience::cdk::io::formats::CRK2DFormat

|o*org::openscience::cdk::io::formats::CRK3DFormat

|o*org::openscience::cdk::structgen::stochastic::operator::CrossoverMachine

|o*org::openscience::cdk::Crystal

|o*org::openscience::cdk::geometry::CrystalGeometryTools

|o*org::openscience::cdk::io::formats::CrystClustFormat

|o*org::openscience::cdk::io::CrystClustReader

|o*org::openscience::cdk::io::CrystClustWriter

|o*org::openscience::cdk::io::formats::CTXFormat

|o*org::openscience::cdk::io::CTXReader

|o*org::openscience::cdk::ringsearch::cyclebasis::CycleBasis

|o*org::openscience::cdk::internet::DADMLReader

|o*org::openscience::cdk::internet::DADMLResult

|o*org::openscience::cdk::io::formats::DaltonFormat

|o*org::openscience::cdk::tools::DataFeatures

|o*org::openscience::cdk::tools::DataFeaturesTool

|o*org::openscience::cdk::tools::DeAromatizationTool

|o*org::openscience::cdk::debug::DebugAminoAcid

|o*org::openscience::cdk::debug::DebugAtom

|o*org::openscience::cdk::debug::DebugAtomContainer

|o*org::openscience::cdk::debug::DebugAtomContainerSet

|o*org::openscience::cdk::debug::DebugAtomParity

|o*org::openscience::cdk::debug::DebugAtomType

|o*org::openscience::cdk::debug::DebugBioPolymer

|o*org::openscience::cdk::debug::DebugBond

|o*org::openscience::cdk::debug::DebugChemFile

|o*org::openscience::cdk::debug::DebugChemModel

|o*org::openscience::cdk::debug::DebugChemObject

|o*org::openscience::cdk::debug::DebugChemObjectBuilder

|o*org::openscience::cdk::debug::DebugChemSequence

|o*org::openscience::cdk::debug::DebugCrystal

|o*org::openscience::cdk::debug::DebugElectronContainer

|o*org::openscience::cdk::debug::DebugElement

|o*org::openscience::cdk::debug::DebugIsotope

|o*org::openscience::cdk::debug::DebugLonePair

|o*org::openscience::cdk::debug::DebugMapping

|o*org::openscience::cdk::debug::DebugMolecule

|o*org::openscience::cdk::debug::DebugMoleculeSet

|o*org::openscience::cdk::debug::DebugMonomer

|o*org::openscience::cdk::debug::DebugPDBAtom

|o*org::openscience::cdk::debug::DebugPDBMonomer

|o*org::openscience::cdk::debug::DebugPDBPolymer

|o*org::openscience::cdk::debug::DebugPDBStructure

|o*org::openscience::cdk::debug::DebugPolymer

|o*org::openscience::cdk::debug::DebugPseudoAtom

|o*org::openscience::cdk::debug::DebugReaction

|o*org::openscience::cdk::debug::DebugReactionSet

|o*org::openscience::cdk::debug::DebugRing

|o*org::openscience::cdk::debug::DebugRingSet

|o*org::openscience::cdk::debug::DebugSingleElectron

|o*org::openscience::cdk::debug::DebugStrand

|o*org::openscience::cdk::smiles::DeduceBondSystemTool

|o*org::openscience::cdk::DefaultChemObjectBuilder

|o*org::openscience::cdk::io::DefaultChemObjectReader

|o*org::openscience::cdk::io::DefaultChemObjectWriter

|o*org::openscience::cdk::io::iterator::event::DefaultEventChemObjectReader

|o*org::openscience::cdk::io::iterator::DefaultIteratingChemObjectReader

|o*org::openscience::cdk::isomorphism::matchers::smarts::DegreeAtom

|o*org::openscience::cdk::applications::DescriptorCalculator

|o*org::openscience::cdk::qsar::DescriptorEngine

|o*org::openscience::cdk::qsar::DescriptorException

|o*org::openscience::cdk::qsar::DescriptorSpecification

|o*org::openscience::cdk::qsar::DescriptorValue

|o*org::openscience::cdk::applications::jchempaint::DevelStatusBar

|o*org::openscience::cdk::dict::Dictionary

|o*org::openscience::cdk::applications::jchempaint::action::DictionaryAction

|o*org::openscience::cdk::dict::DictionaryDatabase

|o*org::openscience::cdk::applications::jchempaint::dialogs::DictionaryDialog

|o*org::openscience::cdk::dict::DictionaryHandler

|o*org::openscience::cdk::validate::DictionaryValidator

|o*org::openscience::cdk::dict::DictRef

|o*org::openscience::cdk::applications::swing::DictRefEditorTableModel

|o*org::openscience::cdk::reaction::type::DisplacementChargeFromAcceptorReaction

|o*org::openscience::cdk::reaction::type::DisplacementChargeFromDonorReaction

|o*org::openscience::cdk::similarity::DistanceMoment

|o*org::openscience::cdk::qsar::descriptors::atomic::DistanceToAtomDescriptor

|o*org::openscience::cdk::applications::DistLargeInfo

|o*org::openscience::cdk::io::formats::DMol3Format

|o*org::openscience::cdk::io::formats::DOCK5Format

|o*org::openscience::cdk::qsar::result::DoubleArrayResult

|o*org::openscience::cdk::qsar::result::DoubleResult

|o*org::openscience::cdk::applications::jchempaint::DrawingPanel

|o*org::openscience::cdk::qsar::descriptors::molecular::EccentricConnectivityIndexDescriptor

|o*org::openscience::cdk::applications::jchempaint::action::EditAction

|o*org::openscience::cdk::applications::jchempaint::action::EditAtomContainerPropsAction

|o*org::openscience::cdk::applications::jchempaint::action::EditChemObjectPropsAction

|o*org::openscience::cdk::applications::jchempaint::dialogs::EditDictRefs

|o*org::openscience::cdk::applications::jchempaint::action::EditDictRefsAction

|o*org::openscience::cdk::qsar::descriptors::atomic::EffectiveAtomPolarizabilityDescriptor

|o*org::openscience::cdk::ElectronContainer

|o*org::openscience::cdk::reaction::type::ElectronImpactNBEReaction

|o*org::openscience::cdk::reaction::type::ElectronImpactPDBReaction

|o*org::openscience::cdk::modeling::forcefield::ElectrostaticInteractions

|o*org::openscience::cdk::Element

|o*org::openscience::cdk::applications::jchempaint::action::ElementAction

|o*org::openscience::cdk::tools::ElementComparator

|o*org::openscience::cdk::config::ElementPTFactory

|o*org::openscience::cdk::config::elements::ElementPTHandler

|o*org::openscience::cdk::config::elements::ElementPTReader

|o*org::openscience::cdk::config::Elements

|o*org::openscience::cdk::dict::Entry

|o*org::openscience::cdk::EnzymeResidueLocator

|o*org::openscience::cdk::structgen::deterministic::EquivalentClassesDeterministicGenerator

|o*org::openscience::cdk::graph::invariant::EquivalentClassPartitioner

|o*org::openscience::cdk::atomtype::EStateAtomTypeMatcher

|o*org::openscience::cdk::applications::demo::EventCMLDemo

|o*org::openscience::cdk::io::iterator::event::EventCMLHandler

|o*org::openscience::cdk::io::iterator::event::EventCMLReader

|o*org::openscience::cdk::applications::jchempaint::action::ExitAction

|o*org::openscience::cdk::isomorphism::matchers::smarts::ExplicitConnectionAtom

|o*org::openscience::cdk::applications::jchempaint::action::ExportAction

|o*org::openscience::cdk::applications::jchempaint::action::ExportCompChemAction

|o*org::openscience::cdk::fingerprint::ExtendedFingerprinter

|o*org::openscience::cdk::io::formats::FenskeHall_ZMatrixFormat

|o*org::openscience::cdk::applications::swing::FieldTablePanel

|o*org::openscience::cdk::ringsearch::FiguerasSSSRFinder

|o*org::openscience::cdk::applications::File2Text

|o*org::openscience::cdk::applications::FileConvertor

|o*org::openscience::cdk::applications::FileFormatGuesser

|o*org::openscience::cdk::fingerprint::Fingerprinter

|o*org::openscience::cdk::applications::FingerPrinter

|o*org::openscience::cdk::fingerprint::FingerprinterTool

|o*org::openscience::cdk::io::formats::FingerprintFormat

|o*org::openscience::cdk::tools::FixedSizeStack

|o*org::openscience::cdk::applications::jchempaint::action::FlipAction

|o*org::openscience::cdk::applications::undoredo::FlipEdit

|o*org::openscience::cdk::modeling::forcefield::ForceField

|o*org::openscience::cdk::modeling::builder3d::ForceFieldConfigurator

|o*org::openscience::cdk::modeling::forcefield::ForceFieldTools

|o*org::openscience::cdk::isomorphism::matchers::smarts::FormalChargeAtom

|o*org::openscience::cdk::tools::FormatStringBuffer

|o*org::openscience::cdk::tools::FormatStringBuffer::Format

|o*org::openscience::cdk::math::FortranFormat

|o*org::openscience::cdk::math::qm::FourierGridBasis

|o*org::openscience::cdk::Fragment

|o*org::openscience::cdk::FragmentAtom

|o*org::openscience::cdk::qsar::descriptors::molecular::FragmentComplexityDescriptor

|o*org::openscience::cdk::io::formats::GamessFormat

|o*org::openscience::cdk::io::GamessReader

|o*org::openscience::cdk::charges::GasteigerMarsiliPartialCharges

|o*org::openscience::cdk::charges::GasteigerPEPEPartialCharges

|o*org::openscience::cdk::io::formats::Gaussian03Format

|o*org::openscience::cdk::io::Gaussian03Reader

|o*org::openscience::cdk::io::formats::Gaussian90Format

|o*org::openscience::cdk::io::formats::Gaussian92Format

|o*org::openscience::cdk::io::formats::Gaussian94Format

|o*org::openscience::cdk::io::formats::Gaussian95Format

|o*org::openscience::cdk::io::formats::Gaussian98Format

|o*org::openscience::cdk::io::Gaussian98Reader

|o*org::openscience::cdk::io::formats::GaussianInputFormat

|o*org::openscience::cdk::io::program::GaussianInputWriter

|o*org::openscience::cdk::math::qm::GaussiansBasis

|o*org::openscience::cdk::applications::jchempaint::dialogs::GeneralFieldEditor

|o*org::openscience::cdk::applications::jchempaint::dialogs::GeneralSettingsEditor

|o*org::openscience::cdk::tools::GenerateFragments

|o*org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator

|o*org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator::BasicFragment

|o*org::openscience::cdk::modeling::forcefield::GeometricMinimizer

|o*org::openscience::cdk::validate::Geometry3DValidator

|o*org::openscience::cdk::geometry::GeometryTools

|o*org::openscience::cdk::geometry::GeometryToolsInternalCoordinates

|o*org::openscience::cdk::io::formats::GhemicalMMFormat

|o*org::openscience::cdk::io::GhemicalMMReader

|o*org::openscience::cdk::io::formats::GhemicalSPMFormat

|o*org::openscience::cdk::graph::invariant::GIMatrix

|o*org::openscience::cdk::structgen::deterministic::Graph

|o*org::openscience::cdk::fingerprint::GraphOnlyFingerprinter

|o*org::openscience::cdk::applications::swing::GraphRenderer

|o*org::openscience::cdk::renderer::GraphRendererModel

|o*org::openscience::cdk::qsar::descriptors::molecular::GravitationalIndexDescriptor

|o*org::openscience::cdk::tools::GridGenerator

|o*org::openscience::cdk::io::formats::GROMOS96Format

|o*org::openscience::cdk::qsar::descriptors::molecular::HBondAcceptorCountDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::HBondDonorCountDescriptor

|o*org::openscience::cdk::applications::jchempaint::action::HelpAction

|o*org::openscience::cdk::applications::jchempaint::dialogs::HelpDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::HelpDialog::PageLoader

|o*org::openscience::cdk::io::formats::HINFormat

|o*org::openscience::cdk::io::HINReader

|o*org::openscience::cdk::io::HINWriter

|o*org::openscience::cdk::tools::HOSECodeAnalyser

|o*org::openscience::cdk::tools::HOSECodeGenerator

|o*org::openscience::cdk::tools::HOSECodeGenerator::TreeNode

|o*org::openscience::cdk::aromaticity::HueckelAromaticityDetector

|o*org::openscience::cdk::graph::invariant::HuLuIndexTool

|o*org::openscience::cdk::atomtype::HybridizationMatcher

|o*org::openscience::cdk::atomtype::HybridizationStateATMatcher

|o*org::openscience::cdk::tools::HydrogenAdder

|o*org::openscience::cdk::isomorphism::matchers::smarts::HydrogenAtom

|o*org::openscience::cdk::layout::HydrogenPlacer

|o*org::openscience::cdk::reaction::type::HydrogenRearrangementDeltaReaction

|o*org::openscience::cdk::reaction::type::HydrogenRearrangementGammaReaction

|o*org::openscience::cdk::reaction::type::HyperconjugationReaction

|o*org::openscience::cdk::interfaces::IAminoAcid

|o*org::openscience::cdk::interfaces::IAtom

|o*org::openscience::cdk::renderer::color::IAtomColorer

|o*org::openscience::cdk::interfaces::IAtomContainer

|o*org::openscience::cdk::interfaces::IAtomContainerSet

|o*org::openscience::cdk::qsar::IAtomicDescriptor

|o*org::openscience::cdk::qsar::IAtomPairDescriptor

|o*org::openscience::cdk::interfaces::IAtomParity

|o*org::openscience::cdk::interfaces::IAtomType

|o*org::openscience::cdk::config::IAtomTypeConfigurator

|o*org::openscience::cdk::atomtype::IAtomTypeGuesser

|o*org::openscience::cdk::atomtype::IAtomTypeMatcher

|o*org::openscience::cdk::math::qm::IBasis

|o*org::openscience::cdk::interfaces::IBioPolymer

|o*org::openscience::cdk::interfaces::IBond

|o*org::openscience::cdk::qsar::IBondDescriptor

|o*org::openscience::cdk::event::ICDKChangeListener

|o*org::openscience::cdk::applications::plugin::ICDKEditBus

|o*org::openscience::cdk::applications::plugin::ICDKPlugin

|o*org::openscience::cdk::event::ICDKSelectionChangeListener

|o*org::openscience::cdk::interfaces::IChemFile

|o*org::openscience::cdk::io::formats::IChemFormat

|o*org::openscience::cdk::io::formats::IChemFormatMatcher

|o*org::openscience::cdk::interfaces::IChemModel

|o*org::openscience::cdk::interfaces::IChemObject

|o*org::openscience::cdk::interfaces::IChemObjectBuilder

|o*org::openscience::cdk::interfaces::IChemObjectChangeEvent

|o*org::openscience::cdk::io::IChemObjectIO

|o*org::openscience::cdk::io::listener::IChemObjectIOListener

|o*org::openscience::cdk::interfaces::IChemObjectListener

|o*org::openscience::cdk::io::IChemObjectReader

|o*org::openscience::cdk::io::IChemObjectWriter

|o*org::openscience::cdk::interfaces::IChemSequence

|o*org::openscience::cdk::io::cml::ICMLConvention

|o*org::openscience::cdk::libio::cml::ICMLCustomizer

|o*org::openscience::cdk::io::cml::ICMLModule

|o*org::openscience::cdk::interfaces::ICrystal

|o*org::openscience::cdk::tools::IDCreator

|o*org::openscience::cdk::tools::IDeduceBondOrderTool

|o*org::openscience::cdk::qsar::IDescriptor

|o*org::openscience::cdk::qsar::result::IDescriptorResult

|o*org::openscience::cdk::interfaces::IElectronContainer

|o*org::openscience::cdk::interfaces::IElement

|o*org::openscience::cdk::io::iterator::event::IEventChemObjectReader

|o*org::openscience::cdk::fingerprint::IFingerprinter

|o*org::openscience::cdk::math::IFunction

|o*org::openscience::cdk::graph::matrix::IGraphMatrix

|o*org::openscience::cdk::IImplementationSpecification

|o*org::openscience::cdk::interfaces::IIsotope

|o*org::openscience::cdk::io::iterator::IIteratingChemObjectReader

|o*org::openscience::cdk::applications::jchempaint::io::IJCPFileFilter

|o*org::openscience::cdk::interfaces::ILonePair

|o*org::openscience::cdk::interfaces::IMapping

|o*org::openscience::cdk::math::IMatrix

|o*org::openscience::cdk::qsar::model::IModel

|o*org::openscience::cdk::qsar::IMolecularDescriptor

|o*org::openscience::cdk::interfaces::IMolecule

|o*org::openscience::cdk::interfaces::IMoleculeSet

|o*org::openscience::cdk::interfaces::IMonomer

|o*org::openscience::cdk::isomorphism::matchers::smarts::ImplicitHCountAtom

|o*org::openscience::cdk::io::inchi::INChIContentProcessorTool

|o*org::openscience::cdk::io::formats::INChIFormat

|o*org::openscience::cdk::inchi::InChIGenerator

|o*org::openscience::cdk::inchi::InChIGeneratorFactory

|o*org::openscience::cdk::io::inchi::INChIHandler

|o*org::openscience::cdk::io::formats::INChIPlainTextFormat

|o*org::openscience::cdk::io::INChIPlainTextReader

|o*org::openscience::cdk::io::INChIReader

|o*org::openscience::cdk::inchi::InChIToStructure

|o*org::openscience::cdk::exception::IncorrectUseOfCDKCoreClassError

|o*org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicHardnessDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicSoftnessDescriptor

|o*org::openscience::cdk::charges::InductivePartialCharges

|o*org::openscience::cdk::applications::jchempaint::dialogs::InfoDialog

|o*org::openscience::cdk::applications::jchempaint::action::InsertSmilesAction

|o*org::openscience::cdk::applications::jchempaint::action::InsertStructureAction

|o*org::openscience::cdk::applications::jchempaint::InsertTextPanel

|o*org::openscience::cdk::qsar::result::IntegerArrayResult

|o*org::openscience::cdk::io::setting::IntegerIOSetting

|o*org::openscience::cdk::qsar::result::IntegerResult

|o*org::openscience::cdk::smiles::InterruptableSmilesParser

|o*org::openscience::cdk::exception::InvalidSmilesException

|o*org::openscience::cdk::isomorphism::matchers::InverseSymbolSetQueryAtom

|o*org::openscience::cdk::smiles::InvPair

|o*org::openscience::cdk::io::setting::IOSetting

|o*org::openscience::cdk::qsar::descriptors::atomic::IPAtomicDescriptor

|o*org::openscience::cdk::qsar::descriptors::bond::IPBondDescriptor

|o*org::openscience::cdk::interfaces::IPDBAtom

|o*org::openscience::cdk::interfaces::IPDBMonomer

|o*org::openscience::cdk::interfaces::IPDBPolymer

|o*org::openscience::cdk::interfaces::IPDBStructure

|o*org::openscience::cdk::qsar::descriptors::molecular::IPMolecularDescriptor

|o*org::openscience::cdk::interfaces::IPolymer

|o*org::openscience::cdk::modeling::forcefield::IPotentialFunction

|o*org::openscience::cdk::interfaces::IPseudoAtom

|o*org::openscience::cdk::isomorphism::matchers::IQueryAtom

|o*org::openscience::cdk::isomorphism::matchers::IQueryAtomContainer

|o*org::openscience::cdk::isomorphism::matchers::IQueryBond

|o*org::openscience::cdk::geometry::IRDFWeightFunction

|o*org::openscience::cdk::interfaces::IReaction

|o*org::openscience::cdk::reaction::IReactionProcess

|o*org::openscience::cdk::interfaces::IReactionSet

|o*org::openscience::cdk::io::listener::IReaderListener

|o*org::openscience::cdk::renderer::IRenderer2D

|o*org::openscience::cdk::io::formats::IResourceFormat

|o*org::openscience::cdk::interfaces::IRing

|o*org::openscience::cdk::interfaces::IRingSet

|o*org::openscience::cdk::renderer::ISimpleRenderer2D

|o*org::openscience::cdk::interfaces::ISingleElectron

|o*org::openscience::cdk::templates::saturatedhydrocarbons::IsoAlkanes

|o*org::openscience::cdk::isomorphism::IsomorphismTester

|o*org::openscience::cdk::Isotope

|o*org::openscience::cdk::config::IsotopeFactory

|o*org::openscience::cdk::tools::IsotopeGenerator

|o*org::openscience::cdk::config::isotopes::IsotopeHandler

|o*org::openscience::cdk::config::isotopes::IsotopeReader

|o*org::openscience::cdk::qsar::descriptors::atomic::IsProtonInAromaticSystemDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::IsProtonInConjugatedPiSystemDescriptor

|o*org::openscience::cdk::interfaces::IStrand

|o*org::openscience::cdk::structgen::IStructureGenerationListener

|o*org::openscience::cdk::io::iterator::IteratingMDLReader

|o*org::openscience::cdk::io::iterator::IteratingSMILESReader

|o*org::openscience::cdk::applications::undoredo::IUndoRedoHandler

|o*org::openscience::cdk::tools::IValencyChecker

|o*org::openscience::cdk::validate::IValidator

|o*org::openscience::cdk::qsar::model::weka::IWekaModel

|o*org::openscience::cdk::io::listener::IWriterListener

|o*org::openscience::cdk::io::formats::JaguarFormat

|o*org::openscience::cdk::applications::jchempaint::application::JChemPaint

|o*org::openscience::cdk::applications::jchempaint::applet::JChemPaintAbstractApplet

|o*org::openscience::cdk::applications::jchempaint::applet::JChemPaintEditorApplet

|o*org::openscience::cdk::applications::jchempaint::JChemPaintEditorPanel

|o*org::openscience::cdk::applications::jchempaint::JChemPaintMenuBar

|o*org::openscience::cdk::applications::jchempaint::JChemPaintModel

|o*org::openscience::cdk::applications::jchempaint::dialogs::JChemPaintModelPropsEditor

|o*org::openscience::cdk::applications::jchempaint::JChemPaintPanel

|o*org::openscience::cdk::applications::jchempaint::JChemPaintPanel::AppCloser

|o*org::openscience::cdk::applications::jchempaint::JChemPaintPanel::PopupListener

|o*org::openscience::cdk::applications::jchempaint::JChemPaintPopupMenu

|o*org::openscience::cdk::applications::jchempaint::applet::JChemPaintViewerOnlyApplet

|o*org::openscience::cdk::applications::jchempaint::JChemPaintViewerOnlyPanel

|o*org::openscience::cdk::applications::jchempaint::action::JCPAction

|o*org::openscience::cdk::applications::jchempaint::io::JCPCompChemInputSaveFileFilter

|o*org::openscience::cdk::applications::jchempaint::JCPConstants

|o*org::openscience::cdk::applications::jchempaint::io::JCPExportFileFilter

|o*org::openscience::cdk::applications::jchempaint::io::JCPFileFilter

|o*org::openscience::cdk::applications::jchempaint::io::JCPFileView

|o*org::openscience::cdk::applications::jchempaint::JCPLocalizationHandler

|o*org::openscience::cdk::applications::jchempaint::JCPPropertyHandler

|o*org::openscience::cdk::applications::jchempaint::io::JCPSaveFileFilter

|o*org::openscience::cdk::applications::jchempaint::dnd::JCPTransferHandler

|o*org::openscience::cdk::applications::undoredo::JCPUndoRedoHandler

|o*org::openscience::cdk::applications::swing::JExternalFrame

|o*org::openscience::cdk::io::formats::JMEFormat

|o*org::openscience::cdk::io::cml::JMOLANIMATIONConvention

|o*org::openscience::cdk::geometry::alignment::KabschAlignment

|o*org::openscience::cdk::qsar::descriptors::molecular::KappaShapeIndicesDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::LargestChainDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::LargestPiSystemDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::LengthOverBreadthDescriptor

|o*org::openscience::cdk::applications::jchempaint::action::LicenseAction

|o*org::openscience::cdk::applications::jchempaint::dialogs::LicenseDialog

|o*org::openscience::cdk::qsar::model::R::LinearRegressionModel

|o*org::openscience::cdk::qsar::model::R2::LinearRegressionModel

|o*org::openscience::cdk::qsar::model::R::LinearRegressionModelFit

|o*org::openscience::cdk::qsar::model::R::LinearRegressionModelPredict

|o*org::openscience::cdk::qsar::model::R::LinearRegressionModelSummary

|o*org::openscience::cdk::modeling::forcefield::LineSearch

|o*org::openscience::cdk::modeling::forcefield::LineSearchForTheWolfeConditions

|o*org::openscience::cdk::applications::swing::ListeningTableModel

|o*org::openscience::cdk::tools::LoggingTool

|o*org::openscience::cdk::isomorphism::matchers::smarts::LogicalOperatorAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::LogicalOperatorBond

|o*org::openscience::cdk::LonePair

|o*org::openscience::cdk::tools::LonePairElectronChecker

|o*org::openscience::cdk::qsar::descriptors::molecular::LongestAliphaticChainDescriptor

|o*org::openscience::cdk::io::formats::MACiEFormat

|o*org::openscience::cdk::io::MACiEReader

|o*org::openscience::cdk::io::formats::MacroModelFormat

|o*net::sf::cdk::tools::MakeJavafilesFiles

|o*net::sf::cdk::tools::MakeRequiresfilesFiles

|o*org::openscience::cdk::Mapping

|o*org::openscience::cdk::Mapping::ChemObjectIterator

|o*org::openscience::cdk::isomorphism::matchers::smarts::MassAtom

|o*org::openscience::cdk::math::MathTools

|o*org::openscience::cdk::math::Matrix

|o*org::openscience::cdk::qsar::descriptors::molecular::MDEDescriptor

|o*org::openscience::cdk::io::formats::MDLFormat

|o*org::openscience::cdk::io::cml::MDLMolConvention

|o*org::openscience::cdk::io::MDLReader

|o*org::openscience::cdk::io::formats::MDLRXNFormat

|o*org::openscience::cdk::io::MDLRXNReader

|o*org::openscience::cdk::io::MDLRXNV2000Reader

|o*org::openscience::cdk::io::formats::MDLRXNV3000Format

|o*org::openscience::cdk::io::MDLRXNV3000Reader

|o*org::openscience::cdk::io::MDLRXNWriter

|o*org::openscience::cdk::io::formats::MDLV2000Format

|o*org::openscience::cdk::io::MDLV2000Reader

|o*org::openscience::cdk::io::formats::MDLV3000Format

|o*org::openscience::cdk::io::MDLV3000Reader

|o*org::openscience::cdk::io::MDLWriter

|o*org::openscience::cdk::libio::md::MDMolecule

|o*org::openscience::cdk::io::cml::MDMoleculeConvention

|o*org::openscience::cdk::libio::cml::MDMoleculeCustomizer

|o*org::openscience::cdk::applications::jchempaint::action::MenuBarAction

|o*org::openscience::cdk::applications::undoredo::MergeMoleculesEdit

|o*org::openscience::cdk::tools::MFAnalyser

|o*org::openscience::cdk::graph::MinimalPathIterator

|o*org::openscience::cdk::atomtype::MM2AtomTypeMatcher

|o*org::openscience::cdk::modeling::builder3d::MM2BasedAtomTypePattern

|o*org::openscience::cdk::modeling::builder3d::MM2BasedParameterSetReader

|o*org::openscience::cdk::atomtype::MMFF94AtomTypeMatcher

|o*org::openscience::cdk::modeling::builder3d::MMFF94BasedAtomTypePattern

|o*org::openscience::cdk::modeling::builder3d::MMFF94BasedParameterSetReader

|o*org::openscience::cdk::modeling::forcefield::MMFF94EnergyFunction

|o*org::openscience::cdk::modeling::builder3d::MMFF94ParametersCall

|o*org::openscience::cdk::charges::MMFF94PartialCharges

|o*org::openscience::cdk::io::formats::MMODFormat

|o*org::openscience::cdk::modeling::builder3d::ModelBuilder3D

|o*org::openscience::cdk::applications::jchempaint::action::ModelPropsAction

|o*org::openscience::cdk::applications::jchempaint::action::ModifyDisplaySettingsAction

|o*org::openscience::cdk::applications::jchempaint::action::ModifyGeneralSettingsAction

|o*org::openscience::cdk::applications::jchempaint::dialogs::ModifyGeneralSettingsDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::ModifyRenderOptionsDialog

|o*org::openscience::cdk::io::formats::Mol2Format

|o*org::openscience::cdk::io::Mol2Reader

|o*org::openscience::cdk::io::Mol2Writer

|o*org::openscience::cdk::Molecule

|o*org::openscience::cdk::iupac::parser::MoleculeBuilder

|o*org::openscience::cdk::templates::MoleculeFactory

|o*org::openscience::cdk::tools::features::MoleculeFeaturesTool

|o*org::openscience::cdk::graph::MoleculeGraphs

|o*org::openscience::cdk::applications::swing::MoleculeListPanel

|o*org::openscience::cdk::applications::swing::MoleculeListPanel::StrucContainer

|o*org::openscience::cdk::applications::swing::MoleculeListViewer

|o*org::openscience::cdk::MoleculeSet

|o*org::openscience::cdk::tools::manipulator::MoleculeSetManipulator

|o*org::openscience::cdk::applications::swing::MoleculesTable

|o*org::openscience::cdk::applications::swing::MoleculeViewer2D

|o*org::openscience::cdk::applications::swing::MoleculeViewer2DPanel

|o*org::openscience::cdk::qsar::descriptors::molecular::MomentOfInertiaDescriptor

|o*org::openscience::cdk::Monomer

|o*org::openscience::cdk::io::formats::MOPAC2002Format

|o*org::openscience::cdk::io::formats::MOPAC7Format

|o*org::openscience::cdk::io::formats::MOPAC93Format

|o*org::openscience::cdk::io::formats::MOPAC97Format

|o*org::openscience::cdk::graph::invariant::MorganNumbersTools

|o*org::openscience::cdk::applications::undoredo::MoveAtomEdit

|o*org::openscience::cdk::io::formats::MPQCFormat

|o*org::openscience::cdk::geometry::surface::NeighborList

|o*org::openscience::cdk::applications::jchempaint::action::NewAction

|o*org::openscience::cdk::modeling::forcefield::NewtonRaphsonMethod

|o*org::openscience::cdk::nonotify::NNAminoAcid

|o*org::openscience::cdk::nonotify::NNAtom

|o*org::openscience::cdk::nonotify::NNAtomContainer

|o*org::openscience::cdk::nonotify::NNAtomContainerSet

|o*org::openscience::cdk::nonotify::NNAtomParity

|o*org::openscience::cdk::nonotify::NNAtomType

|o*org::openscience::cdk::nonotify::NNBioPolymer

|o*org::openscience::cdk::nonotify::NNBond

|o*org::openscience::cdk::nonotify::NNChemFile

|o*org::openscience::cdk::nonotify::NNChemModel

|o*org::openscience::cdk::nonotify::NNChemObject

|o*org::openscience::cdk::nonotify::NNChemSequence

|o*org::openscience::cdk::nonotify::NNCrystal

|o*org::openscience::cdk::nonotify::NNElectronContainer

|o*org::openscience::cdk::nonotify::NNElement

|o*org::openscience::cdk::nonotify::NNIsotope

|o*org::openscience::cdk::nonotify::NNLonePair

|o*org::openscience::cdk::nonotify::NNMapping

|o*org::openscience::cdk::nonotify::NNMolecule

|o*org::openscience::cdk::nonotify::NNMoleculeSet

|o*org::openscience::cdk::nonotify::NNMonomer

|o*org::openscience::cdk::nonotify::NNPDBAtom

|o*org::openscience::cdk::nonotify::NNPDBMonomer

|o*org::openscience::cdk::nonotify::NNPDBPolymer

|o*org::openscience::cdk::nonotify::NNPDBStructure

|o*org::openscience::cdk::nonotify::NNPolymer

|o*org::openscience::cdk::nonotify::NNPseudoAtom

|o*org::openscience::cdk::nonotify::NNReaction

|o*org::openscience::cdk::nonotify::NNReactionSet

|o*org::openscience::cdk::nonotify::NNRing

|o*org::openscience::cdk::nonotify::NNRingSet

|o*org::openscience::cdk::nonotify::NNSingleElectron

|o*org::openscience::cdk::nonotify::NNStrand

|o*org::openscience::cdk::iupac::parser::NomParser

|o*org::openscience::cdk::nonotify::NoNotificationChemObjectBuilder

|o*org::openscience::cdk::tools::Normalizer

|o*org::openscience::cdk::exception::NoSuchAtomException

|o*org::openscience::cdk::exception::NoSuchAtomTypeException

|o*org::openscience::cdk::geometry::surface::NumericalSurface

|o*org::openscience::cdk::io::formats::NWChemFormat

|o*org::openscience::cdk::math::qm::OneElectronJob

|o*org::openscience::cdk::applications::jchempaint::action::OpenAction

|o*org::openscience::cdk::libio::openbabel::OpenBabelConvert

|o*org::openscience::cdk::isomorphism::matchers::smarts::OperatorContainer

|o*org::openscience::cdk::io::setting::OptionIOSetting

|o*org::openscience::cdk::math::qm::Orbitals

|o*org::openscience::cdk::isomorphism::matchers::OrderQueryBond

|o*org::openscience::cdk::isomorphism::matchers::smarts::OrderQueryBond

|o*org::openscience::cdk::layout::OverlapResolver

|o*org::openscience::cdk::layout::OverlapResolver::OverlapPair

|o*org::openscience::cdk::dict::OWLFile

|o*org::openscience::cdk::iupac::parser::ParseException

|o*org::openscience::cdk::renderer::color::PartialAtomicChargeColors

|o*org::openscience::cdk::structgen::stochastic::PartialFilledStructureMerger

|o*org::openscience::cdk::qsar::descriptors::atomic::PartialPiChargeDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::PartialSigmaChargeDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::PartialTChargeMMFF94Descriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::PartialTChargePEOEDescriptor

|o*org::openscience::cdk::ringsearch::Path

|o*org::openscience::cdk::graph::PathTools

|o*org::openscience::cdk::io::PCCompoundASNReader

|o*org::openscience::cdk::io::formats::PCModelFormat

|o*org::openscience::cdk::protein::data::PDBAtom

|o*org::openscience::cdk::libio::cml::PDBAtomCustomizer

|o*org::openscience::cdk::io::cml::PDBConvention

|o*org::openscience::cdk::io::formats::PDBFormat

|o*org::openscience::cdk::io::formats::PDBMLFormat

|o*org::openscience::cdk::protein::data::PDBMonomer

|o*org::openscience::cdk::protein::data::PDBPolymer

|o*org::openscience::cdk::io::PDBReader

|o*org::openscience::cdk::protein::data::PDBStrand

|o*org::openscience::cdk::protein::data::PDBStructure

|o*org::openscience::cdk::validate::PDBValidator

|o*org::openscience::cdk::io::PDBWriter

|o*org::openscience::cdk::applications::jchempaint::action::PerceiveAtomTypesAction

|o*org::openscience::cdk::PeriodicTableElement

|o*org::openscience::cdk::applications::swing::PeriodicTablePanel

|o*org::openscience::cdk::applications::swing::PeriodicTablePanel::BackAction

|o*org::openscience::cdk::applications::swing::PeriodicTablePanel::ElementButtonAction

|o*org::openscience::cdk::qsar::descriptors::atomic::PeriodicTablePositionDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::PetitjeanNumberDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::PetitjeanShapeIndexDescriptor

|o*org::openscience::cdk::PhysicalConstants

|o*org::openscience::cdk::qsar::descriptors::atompair::PiContactDetectionDescriptor

|o*org::openscience::cdk::qsar::descriptors::atomic::PiElectronegativityDescriptor

|o*org::openscience::cdk::qsar::model::R::PLSRegressionModel

|o*org::openscience::cdk::qsar::model::R::PLSRegressionModelPredict

|o*org::openscience::cdk::applications::plugin::PluginClassLoader

|o*org::openscience::cdk::io::formats::PMPFormat

|o*org::openscience::cdk::io::PMPReader

|o*org::openscience::cdk::graph::rebond::Point

|o*org::openscience::cdk::charges::Polarizability

|o*org::openscience::cdk::Polymer

|o*org::openscience::cdk::controller::PopupController2D

|o*org::openscience::cdk::io::formats::POVRayFormat

|o*org::openscience::cdk::io::formats::PQSChemFormat

|o*org::openscience::cdk::applications::jchempaint::action::PreferencesAction

|o*org::openscience::cdk::math::Primes

|o*org::openscience::cdk::applications::jchempaint::action::PrintAction

|o*org::openscience::cdk::validate::ProblemMarker

|o*org::openscience::cdk::geometry::Projector

|o*org::openscience::cdk::io::listener::PropertiesListener

|o*org::openscience::cdk::tools::ProteinBuilderTool

|o*org::openscience::cdk::protein::ProteinPocketFinder

|o*org::openscience::cdk::qsar::descriptors::atomic::ProtonTotalPartialChargeDescriptor

|o*org::openscience::cdk::PseudoAtom

|o*org::openscience::cdk::applications::swing::editor::PseudoAtomEditor

|o*org::openscience::cdk::applications::jchempaint::dialogs::PTDialog

|o*org::openscience::cdk::io::formats::PubChemASNFormat

|o*org::openscience::cdk::io::formats::PubChemFormat

|o*org::openscience::cdk::io::formats::QChemFormat

|o*org::openscience::cdk::io::cml::QSARConvention

|o*org::openscience::cdk::libio::cml::QSARCustomizer

|o*org::openscience::cdk::qsar::model::QSARModelException

|o*org::openscience::cdk::math::Quaternion

|o*org::openscience::cdk::isomorphism::matchers::QueryAtomContainer

|o*org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator

|o*org::openscience::cdk::ringsearch::Queue

|o*org::openscience::cdk::reaction::type::RadicalSiteInitiationHReaction

|o*org::openscience::cdk::reaction::type::RadicalSiteInitiationReaction

|o*org::openscience::cdk::structgen::RandomGenerator

|o*org::openscience::cdk::math::RandomNumbersTool

|o*org::openscience::cdk::io::formats::RawCopyFormat

|o*org::openscience::cdk::geometry::RDFCalculator

|o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_G3R

|o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GDR

|o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GHR

|o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GHR_topol

|o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GSR

|o*org::openscience::cdk::Reaction

|o*org::openscience::cdk::Reaction::MappingIterator

|o*org::openscience::cdk::applications::swing::editor::ReactionEditor

|o*org::openscience::cdk::tools::manipulator::ReactionManipulator

|o*org::openscience::cdk::ReactionSet

|o*org::openscience::cdk::ReactionSet::ReactionIterator

|o*org::openscience::cdk::tools::manipulator::ReactionSetManipulator

|o*org::openscience::cdk::reaction::ReactionSpecification

|o*org::openscience::cdk::io::ReaderEvent

|o*org::openscience::cdk::io::ReaderFactory

|o*org::openscience::cdk::reaction::type::RearrangementAnion1Reaction

|o*org::openscience::cdk::reaction::type::RearrangementAnion2Reaction

|o*org::openscience::cdk::reaction::type::RearrangementAnion3Reaction

|o*org::openscience::cdk::reaction::type::RearrangementCation1Reaction

|o*org::openscience::cdk::reaction::type::RearrangementCation2Reaction

|o*org::openscience::cdk::reaction::type::RearrangementCation3Reaction

|o*org::openscience::cdk::reaction::type::RearrangementRadical1Reaction

|o*org::openscience::cdk::reaction::type::RearrangementRadical2Reaction

|o*org::openscience::cdk::reaction::type::RearrangementRadical3Reaction

|o*org::openscience::cdk::graph::rebond::RebondTool

|o*org::openscience::cdk::isomorphism::matchers::smarts::RecurseAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::RecursiveSmartsAtom

|o*org::openscience::cdk::applications::jchempaint::action::RedoAction

|o*org::openscience::cdk::applications::undoredo::RemoveAtomsAndBondsEdit

|o*org::openscience::cdk::renderer::Renderer2D

|o*org::openscience::cdk::renderer::Renderer2DModel

|o*org::openscience::cdk::applications::swing::editor::Renderer2DModelEditor

|o*org::openscience::cdk::libio::md::Residue

|o*org::openscience::cdk::qsar::descriptors::bond::ResonancePositiveChargeDescriptor

|o*org::openscience::cdk::isomorphism::mcss::RGraph

|o*org::openscience::cdk::Ring

|o*org::openscience::cdk::isomorphism::matchers::smarts::RingAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::RingBond

|o*org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::RingMembershipAtom

|o*org::openscience::cdk::ringsearch::RingPartitioner

|o*org::openscience::cdk::layout::RingPlacer

|o*org::openscience::cdk::RingSet

|o*org::openscience::cdk::tools::manipulator::RingSetManipulator

|o*org::openscience::cdk::tools::manipulator::RingSizeComparator

|o*org::openscience::cdk::isomorphism::mcss::RMap

|o*org::openscience::cdk::qsar::model::R::RModel

|o*org::openscience::cdk::qsar::model::R2::RModel

|o*org::openscience::cdk::isomorphism::mcss::RNode

|o*org::openscience::cdk::qsar::descriptors::molecular::RotatableBondsCountDescriptor

|o*org::openscience::cdk::io::RssWriter

|o*org::openscience::cdk::qsar::descriptors::molecular::RuleOfFiveDescriptor

|o*org::openscience::cdk::tools::SaturationChecker

|o*org::openscience::cdk::applications::jchempaint::action::SaveAction

|o*org::openscience::cdk::applications::jchempaint::action::SaveAsAction

|o*org::openscience::cdk::io::formats::SDFFormat

|o*org::openscience::cdk::applications::SDFSubstructureFinder

|o*org::openscience::cdk::applications::jchempaint::action::SetColorSchemeAction

|o*org::openscience::cdk::io::formats::ShelXFormat

|o*org::openscience::cdk::io::ShelXReader

|o*org::openscience::cdk::io::ShelXWriter

|o*org::openscience::cdk::applications::jchempaint::action::ShowChemObjectDumpAction

|o*org::openscience::cdk::applications::jchempaint::action::ShowChemObjectProperty

|o*org::openscience::cdk::applications::jchempaint::action::ShowDictionariesAction

|o*org::openscience::cdk::qsar::descriptors::atomic::SigmaElectronegativityDescriptor

|o*org::openscience::cdk::math::qm::SimpleBasisSet

|o*org::openscience::cdk::iupac::parser::SimpleCharStream

|o*org::openscience::cdk::controller::SimpleController2D

|o*org::openscience::cdk::ringsearch::cyclebasis::SimpleCycle

|o*org::openscience::cdk::ringsearch::cyclebasis::SimpleCycleBasis

|o*org::openscience::cdk::renderer::SimpleRenderer2D

|o*org::openscience::cdk::SingleElectron

|o*org::openscience::cdk::structgen::SingleStructureRandomGenerator

|o*org::openscience::cdk::isomorphism::matchers::smarts::SmallestRingAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::SMARTSBond

|o*org::openscience::cdk::io::formats::SMARTSFormat

|o*org::openscience::cdk::isomorphism::matchers::smarts::SMARTSOperatorAtom

|o*org::openscience::cdk::io::formats::SMILESFIXFormat

|o*org::openscience::cdk::io::formats::SMILESFormat

|o*org::openscience::cdk::smiles::SmilesGenerator

|o*org::openscience::cdk::smiles::SmilesParser

|o*org::openscience::cdk::io::SMILESReader

|o*org::openscience::cdk::tools::SmilesValencyChecker

|o*org::openscience::cdk::applications::demo::SmilesViewerforDeterministicGenerator

|o*org::openscience::cdk::io::SMILESWriter

|o*org::openscience::cdk::modeling::forcefield::SmoothingFunctions

|o*org::openscience::cdk::applications::swing::SortedTableModel

|o*org::openscience::cdk::graph::SpanningTree

|o*org::openscience::cdk::io::formats::SpartanFormat

|o*org::openscience::cdk::ringsearch::SSSRFinder

|o*org::openscience::cdk::fingerprint::StandardSubstructureSets

|o*org::openscience::cdk::applications::jchempaint::StatusBar

|o*org::openscience::cdk::applications::jchempaint::action::StatusBarAction

|o*org::openscience::cdk::modeling::forcefield::SteepestDescentsMethod

|o*org::openscience::cdk::isomorphism::matchers::smarts::StereoBond

|o*org::openscience::cdk::Strand

|o*org::openscience::cdk::modeling::forcefield::StretchBendInteractions

|o*org::openscience::cdk::applications::jchempaint::StringHelper

|o*org::openscience::cdk::io::setting::StringIOSetting

|o*org::openscience::cdk::atomtype::StructGenAtomTypeGuesser

|o*org::openscience::cdk::atomtype::StructGenMatcher

|o*org::openscience::cdk::layout::StructureDiagramGenerator

|o*org::openscience::cdk::tools::StructureResonanceGenerator

|o*org::openscience::cdk::fingerprint::SubstructureFingerprinter

|o*org::openscience::cdk::io::formats::SVGFormat

|o*org::openscience::cdk::io::SVGWriter

|o*org::openscience::cdk::io::listener::SwingGUIListener

|o*org::openscience::cdk::tools::SwissArmyKnife

|o*org::openscience::cdk::io::formats::SybylDescriptorFormat

|o*org::openscience::cdk::isomorphism::matchers::SymbolAndChargeQueryAtom

|o*org::openscience::cdk::isomorphism::matchers::SymbolChargeIDQueryAtom

|o*org::openscience::cdk::isomorphism::matchers::SymbolQueryAtom

|o*org::openscience::cdk::config::Symbols

|o*org::openscience::cdk::isomorphism::matchers::SymbolSetQueryAtom

|o*org::openscience::cdk::qsar::descriptors::molecular::TaeAminoAcidDescriptor

|o*org::openscience::cdk::similarity::Tanimoto

|o*org::openscience::cdk::applications::TanimotoCoefficient

|o*org::openscience::cdk::modeling::builder3d::TemplateExtractor

|o*org::openscience::cdk::layout::TemplateHandler

|o*org::openscience::cdk::modeling::builder3d::TemplateHandler3D

|o*org::openscience::cdk::geometry::surface::Tessellate

|o*org::openscience::cdk::io::listener::TextGUIListener

|o*org::openscience::cdk::applications::jchempaint::dialogs::TextViewDialog

|o*org::openscience::cdk::io::formats::TinkerMM2Format

|o*org::openscience::cdk::io::formats::TinkerXYZFormat

|o*org::openscience::cdk::iupac::parser::Token

|o*org::openscience::cdk::applications::jchempaint::action::ToolBarAction

|o*org::openscience::cdk::applications::jchempaint::ToolBarMaker

|o*org::openscience::cdk::graph::matrix::TopologicalMatrix

|o*org::openscience::cdk::modeling::forcefield::Torsions

|o*org::openscience::cdk::isomorphism::matchers::smarts::TotalConnectionAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::TotalHCountAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::TotalRingConnectionAtom

|o*org::openscience::cdk::isomorphism::matchers::smarts::TotalValencyAtom

|o*org::openscience::cdk::qsar::descriptors::molecular::TPSADescriptor

|o*org::openscience::cdk::geometry::surface::Triangle

|o*org::openscience::cdk::io::formats::TurboMoleFormat

|o*org::openscience::cdk::config::TXTBasedAtomTypeConfigurator

|o*org::openscience::cdk::applications::jchempaint::action::UndoAction

|o*org::openscience::cdk::applications::undoredo::UndoAdapter

|o*org::openscience::cdk::applications::jchempaint::UndoStack

|o*org::openscience::cdk::io::formats::UniChemXYZFormat

|o*org::openscience::cdk::isomorphism::UniversalIsomorphismTester

|o*org::openscience::cdk::exception::UnsupportedChemObjectException

|o*org::openscience::cdk::qsar::model::R::V2M

|o*org::openscience::cdk::qsar::descriptors::molecular::VAdjMaDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::ValenceCarbonConnectivityOrderOneDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::ValenceCarbonConnectivityOrderZeroDescriptor

|o*org::openscience::cdk::tools::ValencyChecker

|o*org::openscience::cdk::tools::ValencyHybridChecker

|o*org::openscience::cdk::atomtype::ValencyMatcher

|o*org::openscience::cdk::validate::ValencyValidator

|o*org::openscience::cdk::applications::jchempaint::action::ValidateAction

|o*org::openscience::cdk::applications::jchempaint::dialogs::ValidateFrame

|o*org::openscience::cdk::validate::ValidationReport

|o*org::openscience::cdk::validate::ValidationTest

|o*org::openscience::cdk::applications::Validator

|o*org::openscience::cdk::validate::ValidatorEngine

|o*org::openscience::cdk::modeling::forcefield::VanDerWaalsInteractions

|o*org::openscience::cdk::io::formats::VASPFormat

|o*org::openscience::cdk::io::VASPReader

|o*org::openscience::cdk::qsar::descriptors::atomic::VdWRadiusDescriptor

|o*org::openscience::cdk::math::Vector

|o*org::openscience::cdk::Vibration

|o*org::openscience::cdk::structgen::VicinitySampler

|o*org::openscience::cdk::io::formats::ViewmolFormat

|o*org::openscience::cdk::applications::jchempaint::dialogs::WebDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::WebDialog::PageLoader

|o*org::openscience::cdk::applications::jchempaint::action::WebLinkAction

|o*org::openscience::cdk::qsar::descriptors::molecular::WeightDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::WeightedPathDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::WHIMDescriptor

|o*org::openscience::cdk::qsar::descriptors::molecular::WienerNumbersDescriptor

|o*org::openscience::cdk::io::WriterFactory

|o*org::openscience::cdk::internet::WWMMatrixReader

|o*org::openscience::cdk::io::formats::XEDFormat

|o*org::openscience::cdk::database::XindiceReader

|o*org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor

|o*org::openscience::cdk::io::formats::XYZFormat

|o*org::openscience::cdk::io::XYZReader

|o*org::openscience::cdk::io::XYZWriter

|o*org::openscience::cdk::io::formats::YasaraFormat

|o*org::openscience::cdk::qsar::descriptors::molecular::ZagrebIndexDescriptor

|o*org::openscience::cdk::io::formats::ZindoFormat

|o*org::openscience::cdk::io::formats::ZMatrixFormat

|o*org::openscience::cdk::io::ZMatrixReader

|o*org::openscience::cdk::geometry::ZMatrixTools

|\*org::openscience::cdk::applications::jchempaint::action::ZoomAction

o+Class Hierarchy

|o*org::openscience::cdk::applications::jchempaint::dialogs::AboutDialog

|o+org::openscience::cdk::controller::AbstractController2D

|o+org::openscience::cdk::renderer::AbstractRenderer2D

|o*org::openscience::cdk::applications::undoredo::AddAtomsAndBondsEdit

|o*org::openscience::cdk::applications::undoredo::AddFuncGroupEdit

|o*org::openscience::cdk::applications::undoredo::AddHydrogenEdit

|o*org::openscience::cdk::applications::undoredo::AdjustBondOrdersEdit

|o*org::openscience::cdk::ringsearch::AllRingsFinder

|o*org::openscience::cdk::tools::manipulator::AminoAcidManipulator

|o*org::openscience::cdk::templates::AminoAcids

|o*org::openscience::cdk::modeling::forcefield::AngleBending

|o*org::openscience::cdk::math::qm::AngularMomentum

|o*org::openscience::cdk::applications::APIVersionTester

|o*org::openscience::cdk::applications::jchempaint::applet::AppletCanvas

|o*org::openscience::cdk::aromaticity::AromaticityCalculator

|o*org::openscience::cdk::renderer::Arrow

|o*org::openscience::cdk::renderer::ArrowRenderer2D

|o*org::openscience::cdk::AtomContainer::AtomIterator

|o*org::openscience::cdk::AtomContainer::BondIterator

|o*org::openscience::cdk::AtomContainer::ElectronContainerIterator

|o*org::openscience::cdk::AtomContainer::LonePairIterator

|o*org::openscience::cdk::AtomContainer::SingleElectronIterator

|o*org::openscience::cdk::tools::manipulator::AtomContainerComparator

|o*org::openscience::cdk::tools::manipulator::AtomContainerManipulator

|o+org::openscience::cdk::graph::AtomContainerPermutor

|o*org::openscience::cdk::AtomContainerSet::AtomContainerIterator

|o*org::openscience::cdk::tools::manipulator::AtomContainerSetManipulator

|o*org::openscience::cdk::layout::AtomPlacer

|o*org::openscience::cdk::modeling::builder3d::AtomPlacer3D

|o*org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D

|o*org::openscience::cdk::geometry::AtomTools

|o*org::openscience::cdk::charges::AtomTypeCharges

|o*org::openscience::cdk::config::AtomTypeFactory

|o*org::openscience::cdk::config::atomtypes::AtomTypeHandler

|o*org::openscience::cdk::tools::manipulator::AtomTypeManipulator

|o*org::openscience::cdk::config::atomtypes::AtomTypeReader

|o*org::openscience::cdk::tools::AtomTypeTools

|o*org::openscience::cdk::iupac::parser::AttachedGroup

|o*org::openscience::cdk::graph::BFSShortestPath

|o*net::sf::cdk::tools::bibtex::BibTeXMLEntry

|o*net::sf::cdk::tools::bibtex::BibTeXMLFile

|o*org::openscience::cdk::graph::BiconnectivityInspector

|o*org::openscience::cdk::Bond::AtomsIterator

|o*org::openscience::cdk::applications::undoredo::BondChangeEdit

|o*org::openscience::cdk::tools::manipulator::BondManipulator

|o*org::openscience::cdk::modeling::forcefield::BondStretching

|o*org::openscience::cdk::geometry::BondTools

|o*org::openscience::cdk::tools::BremserOneSphereHOSECodePredictor

|o*org::openscience::cdk::graph::rebond::Bspt

|o+org::openscience::cdk::graph::rebond::Bspt::Tuple

|o*org::openscience::cdk::graph::invariant::CanonicalLabeler

|o*org::openscience::cdk::index::CASNumber

|o*net::sf::cdk::tools::doclets::CDKBugTaglet

|o*net::sf::cdk::tools::doclets::CDKCiteTaglet

|o*org::openscience::cdk::CDKConstants

|o*org::openscience::cdk::dict::CDKDictionaryReferences

|o*net::sf::cdk::tools::doclets::CDKDictRefTaglet

|o+org::openscience::cdk::exception::CDKException

|o*net::sf::cdk::tools::doclets::CDKModuleTaglet

|o*org::openscience::cdk::applications::plugin::CDKPluginManager

|o*org::openscience::cdk::applications::plugin::CDKPluginManager::PluginDialogAction

|o+org::openscience::cdk::controller::CDKPopupMenu

|o*org::openscience::cdk::tools::CDKUtilities

|o*org::openscience::cdk::applications::undoredo::ChangeAtomSymbolEdit

|o*org::openscience::cdk::applications::undoredo::ChangeChargeEdit

|o+org::openscience::cdk::applications::undoredo::ChangeCoordsEdit

|o*org::openscience::cdk::applications::undoredo::ChangeIsotopeEdit

|o*org::openscience::cdk::ChemFile::ChemSequenceIterator

|o*org::openscience::cdk::tools::manipulator::ChemFileManipulator

|o*org::openscience::cdk::structgen::stochastic::operator::ChemGraph

|o*org::openscience::cdk::tools::manipulator::ChemModelManipulator

|o*org::openscience::cdk::applications::jchempaint::dialogs::ChemObjectPropertyDialog

|o*org::openscience::cdk::applications::swing::ChemObjectPropertyEditorTableModel

|o*org::openscience::cdk::applications::swing::ChemObjectTree

|o*org::openscience::cdk::applications::swing::ChemObjectTreeNode

|o*org::openscience::cdk::ChemSequence::ChemModelIterator

|o*org::openscience::cdk::tools::manipulator::ChemSequenceManipulator

|o*org::openscience::cdk::qsar::ChiIndexUtils

|o*org::openscience::cdk::applications::undoredo::ClearAllEdit

|o*org::openscience::cdk::math::qm::ClosedShellJob

|o*org::openscience::cdk::io::cml::CMLErrorHandler

|o+org::openscience::cdk::io::cml::CMLHandler

|o*org::openscience::cdk::io::cml::CMLResolver

|o*org::openscience::cdk::io::cml::CMLStack

|o*org::openscience::cdk::qsar::model::R::CNNClassificationModelFit

|o*org::openscience::cdk::qsar::model::R::CNNClassificationModelPredict

|o*org::openscience::cdk::qsar::model::R::CNNRegressionModelFit

|o*org::openscience::cdk::qsar::model::R::CNNRegressionModelPredict

|o*org::openscience::cdk::qsar::model::R::CNNRegressionModelSummary

|o*org::openscience::cdk::math::Complex

|o*org::openscience::cdk::graph::invariant::ConjugatedPiSystemsDetector

|o*org::openscience::cdk::modeling::forcefield::ConjugateGradientMethod

|o*org::openscience::cdk::graph::ConnectivityChecker

|o*org::openscience::cdk::controller::Controller2DModel

|o*org::openscience::cdk::libio::cml::Convertor

|o*org::openscience::cdk::libio::biojava::Convertor

|o*org::openscience::cdk::applications::undoredo::ConvertToPseudoAtomEdit

|o*org::openscience::cdk::applications::undoredo::ConvertToRadicalEdit

|o*org::openscience::cdk::applications::jchempaint::dialogs::CreateCoordinatesForFileDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::CreateCoordinatesForFileDialog::CreateAction

|o*org::openscience::cdk::structgen::stochastic::operator::CrossoverMachine

|o*org::openscience::cdk::geometry::CrystalGeometryTools

|o*org::openscience::cdk::ringsearch::cyclebasis::CycleBasis

|o*org::openscience::cdk::internet::DADMLReader

|o*org::openscience::cdk::internet::DADMLResult

|o*org::openscience::cdk::tools::DataFeatures

|o*org::openscience::cdk::tools::DataFeaturesTool

|o*org::openscience::cdk::tools::DeAromatizationTool

|o*org::openscience::cdk::smiles::DeduceBondSystemTool

|o*org::openscience::cdk::applications::DescriptorCalculator

|o*org::openscience::cdk::qsar::DescriptorEngine

|o*org::openscience::cdk::qsar::DescriptorValue

|o+org::openscience::cdk::dict::Dictionary

|o*org::openscience::cdk::dict::DictionaryDatabase

|o*org::openscience::cdk::applications::jchempaint::dialogs::DictionaryDialog

|o*org::openscience::cdk::dict::DictionaryHandler

|o*org::openscience::cdk::dict::DictRef

|o*org::openscience::cdk::applications::swing::DictRefEditorTableModel

|o*org::openscience::cdk::similarity::DistanceMoment

|o*org::openscience::cdk::applications::DistLargeInfo

|o*org::openscience::cdk::applications::jchempaint::DrawingPanel

|o*org::openscience::cdk::applications::jchempaint::dialogs::EditDictRefs

|o*org::openscience::cdk::modeling::forcefield::ElectrostaticInteractions

|o*org::openscience::cdk::tools::ElementComparator

|o*org::openscience::cdk::config::ElementPTFactory

|o*org::openscience::cdk::config::elements::ElementPTHandler

|o*org::openscience::cdk::config::elements::ElementPTReader

|o*org::openscience::cdk::config::Elements

|o*org::openscience::cdk::dict::Entry

|o*org::openscience::cdk::structgen::deterministic::EquivalentClassesDeterministicGenerator

|o*org::openscience::cdk::graph::invariant::EquivalentClassPartitioner

|o*org::openscience::cdk::applications::demo::EventCMLDemo

|o+org::openscience::cdk::applications::swing::FieldTablePanel

|o*org::openscience::cdk::ringsearch::FiguerasSSSRFinder

|o*org::openscience::cdk::applications::File2Text

|o*org::openscience::cdk::applications::FileConvertor

|o*org::openscience::cdk::applications::FileFormatGuesser

|o*org::openscience::cdk::applications::FingerPrinter

|o*org::openscience::cdk::fingerprint::FingerprinterTool

|o*org::openscience::cdk::tools::FixedSizeStack

|o*org::openscience::cdk::modeling::builder3d::ForceFieldConfigurator

|o*org::openscience::cdk::modeling::forcefield::ForceFieldTools

|o*org::openscience::cdk::tools::FormatStringBuffer

|o*org::openscience::cdk::tools::FormatStringBuffer::Format

|o*org::openscience::cdk::math::FortranFormat

|o*org::openscience::cdk::charges::GasteigerMarsiliPartialCharges

|o*org::openscience::cdk::charges::GasteigerPEPEPartialCharges

|o*org::openscience::cdk::applications::jchempaint::dialogs::GeneralFieldEditor

|o*org::openscience::cdk::tools::GenerateFragments

|o*org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator

|o*org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator::BasicFragment

|o+org::openscience::cdk::modeling::forcefield::GeometricMinimizer

|o*org::openscience::cdk::geometry::GeometryTools

|o*org::openscience::cdk::geometry::GeometryToolsInternalCoordinates

|o*org::openscience::cdk::graph::invariant::GIMatrix

|o*org::openscience::cdk::structgen::deterministic::Graph

|o*org::openscience::cdk::applications::swing::GraphRenderer

|o*org::openscience::cdk::renderer::GraphRendererModel

|o*org::openscience::cdk::tools::GridGenerator

|o*org::openscience::cdk::applications::jchempaint::dialogs::HelpDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::HelpDialog::PageLoader

|o*org::openscience::cdk::tools::HOSECodeAnalyser

|o*org::openscience::cdk::tools::HOSECodeGenerator

|o*org::openscience::cdk::tools::HOSECodeGenerator::TreeNode

|o*org::openscience::cdk::aromaticity::HueckelAromaticityDetector

|o*org::openscience::cdk::graph::invariant::HuLuIndexTool

|o*org::openscience::cdk::tools::HydrogenAdder

|o*org::openscience::cdk::layout::HydrogenPlacer

|o+org::openscience::cdk::renderer::color::IAtomColorer

|o+org::openscience::cdk::interfaces::IAtomParity

|o+org::openscience::cdk::config::IAtomTypeConfigurator

|o+org::openscience::cdk::atomtype::IAtomTypeGuesser

|o+org::openscience::cdk::atomtype::IAtomTypeMatcher

|o+org::openscience::cdk::math::qm::IBasis

|o+org::openscience::cdk::event::ICDKChangeListener

|o+org::openscience::cdk::applications::plugin::ICDKEditBus

|o*org::openscience::cdk::applications::plugin::ICDKPlugin

|o*org::openscience::cdk::event::ICDKSelectionChangeListener

|o+org::openscience::cdk::interfaces::IChemObject

||o+org::openscience::cdk::ChemObject

|||o+org::openscience::cdk::AtomContainer

||||o+org::openscience::cdk::Crystal

||||o*org::openscience::cdk::debug::DebugAtomContainer

||||o*org::openscience::cdk::Fragment

||||o*org::openscience::cdk::isomorphism::matchers::QueryAtomContainer

||||o*org::openscience::cdk::libio::md::ChargeGroup

||||o*org::openscience::cdk::libio::md::Residue

||||o+org::openscience::cdk::Molecule

||||o+org::openscience::cdk::Monomer

||||o*org::openscience::cdk::nonotify::NNAtomContainer

||||o+org::openscience::cdk::Ring

||||\+org::openscience::cdk::Strand

|||o+org::openscience::cdk::AtomContainerSet

|||o*org::openscience::cdk::AtomParity

|||o+org::openscience::cdk::ChemFile

|||o+org::openscience::cdk::ChemModel

|||o+org::openscience::cdk::ChemSequence

|||o*org::openscience::cdk::debug::DebugChemObject

|||o+org::openscience::cdk::ElectronContainer

|||o+org::openscience::cdk::Element

||||o*org::openscience::cdk::debug::DebugElement

||||o+org::openscience::cdk::Isotope

|||||o+org::openscience::cdk::AtomType

||||||o+org::openscience::cdk::Atom

|||||||o*org::openscience::cdk::debug::DebugAtom

|||||||o*org::openscience::cdk::isomorphism::matchers::SymbolAndChargeQueryAtom

|||||||o*org::openscience::cdk::isomorphism::matchers::SymbolChargeIDQueryAtom

|||||||o*org::openscience::cdk::isomorphism::matchers::SymbolQueryAtom

|||||||o*org::openscience::cdk::nonotify::NNAtom

|||||||o+org::openscience::cdk::protein::data::PDBAtom

|||||||\+org::openscience::cdk::PseudoAtom

||||||| o*org::openscience::cdk::debug::DebugPseudoAtom

||||||| o*org::openscience::cdk::EnzymeResidueLocator

||||||| o*org::openscience::cdk::FragmentAtom

||||||| o*org::openscience::cdk::isomorphism::matchers::InverseSymbolSetQueryAtom

||||||| o+org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::AliphaticAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::AliphaticSymbolAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::AnyAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::AromaticAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::AromaticSymbolAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::AtomicNumberAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::BracketAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::ChiralityAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::ColumnAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::ConnectionCountAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::DegreeAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::ExplicitConnectionAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::FormalChargeAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::HydrogenAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::ImplicitHCountAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::LogicalOperatorAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::MassAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::RecurseAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::RecursiveSmartsAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::RingAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::RingMembershipAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::SmallestRingAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::SMARTSOperatorAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::TotalConnectionAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::TotalHCountAtom

||||||| |o*org::openscience::cdk::isomorphism::matchers::smarts::TotalRingConnectionAtom

||||||| |\*org::openscience::cdk::isomorphism::matchers::smarts::TotalValencyAtom

||||||| o*org::openscience::cdk::isomorphism::matchers::SymbolSetQueryAtom

||||||| \*org::openscience::cdk::nonotify::NNPseudoAtom

||||||o*org::openscience::cdk::debug::DebugAtomType

||||||\*org::openscience::cdk::nonotify::NNAtomType

|||||o*org::openscience::cdk::debug::DebugIsotope

|||||\*org::openscience::cdk::nonotify::NNIsotope

||||o*org::openscience::cdk::nonotify::NNElement

||||\*org::openscience::cdk::PeriodicTableElement

|||o+org::openscience::cdk::Mapping

|||o*org::openscience::cdk::nonotify::NNChemObject

|||o+org::openscience::cdk::protein::data::PDBStructure

|||o+org::openscience::cdk::Reaction

|||\+org::openscience::cdk::ReactionSet

||o*org::openscience::cdk::debug::DebugChemObject

||o+org::openscience::cdk::interfaces::IAtomContainer

||o+org::openscience::cdk::interfaces::IAtomContainerSet

||o+org::openscience::cdk::interfaces::IChemFile

||o+org::openscience::cdk::interfaces::IChemModel

||o+org::openscience::cdk::interfaces::IChemSequence

||o+org::openscience::cdk::interfaces::IElectronContainer

||o+org::openscience::cdk::interfaces::IElement

||o+org::openscience::cdk::interfaces::IMapping

||o+org::openscience::cdk::interfaces::IReaction

||\+org::openscience::cdk::interfaces::IReactionSet

|o+org::openscience::cdk::interfaces::IChemObjectBuilder

|o+org::openscience::cdk::interfaces::IChemObjectChangeEvent

|o+org::openscience::cdk::io::IChemObjectIO

||o+org::openscience::cdk::io::IChemObjectReader

||o+org::openscience::cdk::io::IChemObjectWriter

||o+org::openscience::cdk::io::iterator::event::IEventChemObjectReader

||\+org::openscience::cdk::io::iterator::IIteratingChemObjectReader

|o+org::openscience::cdk::io::listener::IChemObjectIOListener

|o+org::openscience::cdk::interfaces::IChemObjectListener

|o+org::openscience::cdk::libio::cml::ICMLCustomizer

|o+org::openscience::cdk::io::cml::ICMLModule

|o*org::openscience::cdk::tools::IDCreator

|o+org::openscience::cdk::tools::IDeduceBondOrderTool

|o+org::openscience::cdk::qsar::IDescriptor

||o+org::openscience::cdk::qsar::IAtomicDescriptor

|||o+org::openscience::cdk::qsar::AbstractAtomicDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::AtomDegreeDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::AtomHybridizationDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::AtomHybridizationVSEPRDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::AtomValenceDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::BondsToAtomDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::CovalentRadiusDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::DistanceToAtomDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::EffectiveAtomPolarizabilityDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicHardnessDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicSoftnessDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::IPAtomicDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::IsProtonInAromaticSystemDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::IsProtonInConjugatedPiSystemDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::PeriodicTablePositionDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::PiElectronegativityDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::ProtonTotalPartialChargeDescriptor

|||o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_G3R

|||o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GDR

|||o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GHR

|||o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GHR_topol

|||o*org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GSR

|||o*org::openscience::cdk::qsar::descriptors::atomic::SigmaElectronegativityDescriptor

|||\*org::openscience::cdk::qsar::descriptors::atomic::VdWRadiusDescriptor

||o+org::openscience::cdk::qsar::IAtomPairDescriptor

||o+org::openscience::cdk::qsar::IBondDescriptor

||\+org::openscience::cdk::qsar::IMolecularDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::ALOGP

|| o*org::openscience::cdk::qsar::descriptors::molecular::AminoAcidCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::APolDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::AromaticAtomsCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::AromaticBondsCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::AtomCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorCharge

|| o*org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorMass

|| o*org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorPolarizability

|| o*org::openscience::cdk::qsar::descriptors::molecular::BCUTDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::BondCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::BPolDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::CarbonConnectivityOrderOneDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::CarbonConnectivityOrderZeroDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::ChiChainDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::ChiClusterDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::ChiPathClusterDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::ChiPathDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::CPSADescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::EccentricConnectivityIndexDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::FragmentComplexityDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::GravitationalIndexDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::HBondAcceptorCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::HBondDonorCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::IPMolecularDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::KappaShapeIndicesDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::LargestChainDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::LargestPiSystemDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::LengthOverBreadthDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::LongestAliphaticChainDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::MDEDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::MomentOfInertiaDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::PetitjeanNumberDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::PetitjeanShapeIndexDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::RotatableBondsCountDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::RuleOfFiveDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::TaeAminoAcidDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::TPSADescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::VAdjMaDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::ValenceCarbonConnectivityOrderOneDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::ValenceCarbonConnectivityOrderZeroDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::WeightDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::WeightedPathDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::WHIMDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::WienerNumbersDescriptor

|| o*org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor

|| \*org::openscience::cdk::qsar::descriptors::molecular::ZagrebIndexDescriptor

|o+org::openscience::cdk::qsar::result::IDescriptorResult

|o+org::openscience::cdk::fingerprint::IFingerprinter

|o*org::openscience::cdk::math::IFunction

|o+org::openscience::cdk::graph::matrix::IGraphMatrix

|o+org::openscience::cdk::IImplementationSpecification

|o+org::openscience::cdk::applications::jchempaint::io::IJCPFileFilter

|o*org::openscience::cdk::math::IMatrix

|o+org::openscience::cdk::qsar::model::IModel

|o*org::openscience::cdk::io::inchi::INChIContentProcessorTool

|o*org::openscience::cdk::inchi::InChIGenerator

|o*org::openscience::cdk::inchi::InChIGeneratorFactory

|o*org::openscience::cdk::io::inchi::INChIHandler

|o*org::openscience::cdk::inchi::InChIToStructure

|o*org::openscience::cdk::exception::IncorrectUseOfCDKCoreClassError

|o*org::openscience::cdk::charges::InductivePartialCharges

|o*org::openscience::cdk::applications::jchempaint::dialogs::InfoDialog

|o*org::openscience::cdk::applications::jchempaint::InsertTextPanel

|o*org::openscience::cdk::smiles::InvPair

|o+org::openscience::cdk::io::setting::IOSetting

|o+org::openscience::cdk::interfaces::IPDBStructure

|o+org::openscience::cdk::modeling::forcefield::IPotentialFunction

|o+org::openscience::cdk::isomorphism::matchers::IQueryBond

|o*org::openscience::cdk::geometry::IRDFWeightFunction

|o+org::openscience::cdk::reaction::IReactionProcess

|o+org::openscience::cdk::io::formats::IResourceFormat

||o+org::openscience::cdk::io::formats::IChemFormat

|||o*org::openscience::cdk::io::formats::AlchemyFormat

|||o*org::openscience::cdk::io::formats::BGFFormat

|||o*org::openscience::cdk::io::formats::BSFormat

|||o*org::openscience::cdk::io::formats::CacaoCartesianFormat

|||o*org::openscience::cdk::io::formats::CacaoInternalFormat

|||o*org::openscience::cdk::io::formats::CDKSourceCodeFormat

|||o*org::openscience::cdk::io::formats::Chem3D_Cartesian_1Format

|||o*org::openscience::cdk::io::formats::Chem3D_Cartesian_2Format

|||o*org::openscience::cdk::io::formats::ChemDrawFormat

|||o*org::openscience::cdk::io::formats::ChemtoolFormat

|||o*org::openscience::cdk::io::formats::CMLRSSFormat

|||o*org::openscience::cdk::io::formats::CRK2DFormat

|||o*org::openscience::cdk::io::formats::CRK3DFormat

|||o*org::openscience::cdk::io::formats::DMol3Format

|||o*org::openscience::cdk::io::formats::DOCK5Format

|||o*org::openscience::cdk::io::formats::FenskeHall_ZMatrixFormat

|||o*org::openscience::cdk::io::formats::FingerprintFormat

|||o*org::openscience::cdk::io::formats::GaussianInputFormat

|||o*org::openscience::cdk::io::formats::GROMOS96Format

|||o+org::openscience::cdk::io::formats::IChemFormatMatcher

||||o*org::openscience::cdk::io::formats::ABINITFormat

||||o*org::openscience::cdk::io::formats::Aces2Format

||||o*org::openscience::cdk::io::formats::ADFFormat

||||o*org::openscience::cdk::io::formats::CACheFormat

||||o*org::openscience::cdk::io::formats::CIFFormat

||||o*org::openscience::cdk::io::formats::CMLFormat

||||o*org::openscience::cdk::io::formats::CrystClustFormat

||||o*org::openscience::cdk::io::formats::CTXFormat

||||o*org::openscience::cdk::io::formats::DaltonFormat

||||o*org::openscience::cdk::io::formats::GamessFormat

||||o*org::openscience::cdk::io::formats::Gaussian03Format

||||o*org::openscience::cdk::io::formats::Gaussian90Format

||||o*org::openscience::cdk::io::formats::Gaussian92Format

||||o*org::openscience::cdk::io::formats::Gaussian94Format

||||o*org::openscience::cdk::io::formats::Gaussian95Format

||||o*org::openscience::cdk::io::formats::Gaussian98Format

||||o*org::openscience::cdk::io::formats::GhemicalMMFormat

||||o*org::openscience::cdk::io::formats::GhemicalSPMFormat

||||o*org::openscience::cdk::io::formats::HINFormat

||||o*org::openscience::cdk::io::formats::INChIFormat

||||o*org::openscience::cdk::io::formats::INChIPlainTextFormat

||||o*org::openscience::cdk::io::formats::JaguarFormat

||||o*org::openscience::cdk::io::formats::MACiEFormat

||||o*org::openscience::cdk::io::formats::MDLFormat

||||o*org::openscience::cdk::io::formats::MDLRXNFormat

||||o*org::openscience::cdk::io::formats::MDLRXNV3000Format

||||o*org::openscience::cdk::io::formats::MDLV2000Format

||||o*org::openscience::cdk::io::formats::MDLV3000Format

||||o*org::openscience::cdk::io::formats::Mol2Format

||||o*org::openscience::cdk::io::formats::MOPAC2002Format

||||o*org::openscience::cdk::io::formats::MOPAC7Format

||||o*org::openscience::cdk::io::formats::MOPAC93Format

||||o*org::openscience::cdk::io::formats::MOPAC97Format

||||o*org::openscience::cdk::io::formats::NWChemFormat

||||o*org::openscience::cdk::io::formats::PDBFormat

||||o*org::openscience::cdk::io::formats::PMPFormat

||||o*org::openscience::cdk::io::formats::PubChemASNFormat

||||o*org::openscience::cdk::io::formats::QChemFormat

||||o*org::openscience::cdk::io::formats::SDFFormat

||||o*org::openscience::cdk::io::formats::ShelXFormat

||||o*org::openscience::cdk::io::formats::SpartanFormat

||||o*org::openscience::cdk::io::formats::VASPFormat

||||\*org::openscience::cdk::io::formats::ZMatrixFormat

|||o*org::openscience::cdk::io::formats::JMEFormat

|||o*org::openscience::cdk::io::formats::MacroModelFormat

|||o*org::openscience::cdk::io::formats::MMODFormat

|||o*org::openscience::cdk::io::formats::MPQCFormat

|||o*org::openscience::cdk::io::formats::PCModelFormat

|||o*org::openscience::cdk::io::formats::PDBMLFormat

|||o*org::openscience::cdk::io::formats::PQSChemFormat

|||o*org::openscience::cdk::io::formats::PubChemFormat

|||o*org::openscience::cdk::io::formats::RawCopyFormat

|||o*org::openscience::cdk::io::formats::SMARTSFormat

|||o*org::openscience::cdk::io::formats::SMILESFIXFormat

|||o*org::openscience::cdk::io::formats::SMILESFormat

|||o*org::openscience::cdk::io::formats::SybylDescriptorFormat

|||o*org::openscience::cdk::io::formats::TinkerMM2Format

|||o*org::openscience::cdk::io::formats::TinkerXYZFormat

|||o*org::openscience::cdk::io::formats::TurboMoleFormat

|||o*org::openscience::cdk::io::formats::UniChemXYZFormat

|||o*org::openscience::cdk::io::formats::ViewmolFormat

|||o*org::openscience::cdk::io::formats::XEDFormat

|||o*org::openscience::cdk::io::formats::XYZFormat

|||o*org::openscience::cdk::io::formats::YasaraFormat

|||\*org::openscience::cdk::io::formats::ZindoFormat

||o*org::openscience::cdk::io::formats::POVRayFormat

||\*org::openscience::cdk::io::formats::SVGFormat

|o+org::openscience::cdk::renderer::ISimpleRenderer2D

|o*org::openscience::cdk::templates::saturatedhydrocarbons::IsoAlkanes

|o*org::openscience::cdk::isomorphism::IsomorphismTester

|o*org::openscience::cdk::config::IsotopeFactory

|o*org::openscience::cdk::tools::IsotopeGenerator

|o*org::openscience::cdk::config::isotopes::IsotopeHandler

|o*org::openscience::cdk::config::isotopes::IsotopeReader

|o*org::openscience::cdk::structgen::IStructureGenerationListener

|o+org::openscience::cdk::applications::undoredo::IUndoRedoHandler

|o+org::openscience::cdk::tools::IValencyChecker

|o+org::openscience::cdk::validate::IValidator

|o*org::openscience::cdk::applications::jchempaint::application::JChemPaint

|o+org::openscience::cdk::applications::jchempaint::applet::JChemPaintAbstractApplet

|o*org::openscience::cdk::applications::jchempaint::JChemPaintMenuBar

|o*org::openscience::cdk::applications::jchempaint::dialogs::JChemPaintModelPropsEditor

|o*org::openscience::cdk::applications::jchempaint::JChemPaintPanel::AppCloser

|o*org::openscience::cdk::applications::jchempaint::JChemPaintPanel::PopupListener

|o+org::openscience::cdk::applications::jchempaint::action::JCPAction

||o*org::openscience::cdk::applications::jchempaint::action::AboutAction

||o*org::openscience::cdk::applications::jchempaint::action::AddHydrogenAction

||o*org::openscience::cdk::applications::jchempaint::action::AdjustBondOrdersAction

||o*org::openscience::cdk::applications::jchempaint::action::ChangeAtomSymbolAction

||o*org::openscience::cdk::applications::jchempaint::action::ChangeIsotopeAction

||o*org::openscience::cdk::applications::jchempaint::action::ChemAction

||o*org::openscience::cdk::applications::jchempaint::action::CleanupAction

||o*org::openscience::cdk::applications::jchempaint::action::CloseAction

||o*org::openscience::cdk::applications::jchempaint::action::ConvertToAction

||o*org::openscience::cdk::applications::jchempaint::action::ConvertToPseudoAtomAction

||o*org::openscience::cdk::applications::jchempaint::action::ConvertToRadicalAction

||o*org::openscience::cdk::applications::jchempaint::action::CopyPasteAction

||o*org::openscience::cdk::applications::jchempaint::action::CreateInChIAction

||o*org::openscience::cdk::applications::jchempaint::action::CreateReactionAction

||o*org::openscience::cdk::applications::jchempaint::action::CreateSmilesAction

||o*org::openscience::cdk::applications::jchempaint::action::DictionaryAction

||o*org::openscience::cdk::applications::jchempaint::action::EditAction

||o*org::openscience::cdk::applications::jchempaint::action::EditAtomContainerPropsAction

||o*org::openscience::cdk::applications::jchempaint::action::EditChemObjectPropsAction

||o*org::openscience::cdk::applications::jchempaint::action::EditDictRefsAction

||o*org::openscience::cdk::applications::jchempaint::action::ElementAction

||o*org::openscience::cdk::applications::jchempaint::action::ExitAction

||o*org::openscience::cdk::applications::jchempaint::action::FlipAction

||o*org::openscience::cdk::applications::jchempaint::action::HelpAction

||o*org::openscience::cdk::applications::jchempaint::action::InsertSmilesAction

||o*org::openscience::cdk::applications::jchempaint::action::InsertStructureAction

||o*org::openscience::cdk::applications::jchempaint::action::LicenseAction

||o*org::openscience::cdk::applications::jchempaint::action::MenuBarAction

||o*org::openscience::cdk::applications::jchempaint::action::ModelPropsAction

||o*org::openscience::cdk::applications::jchempaint::action::ModifyDisplaySettingsAction

||o*org::openscience::cdk::applications::jchempaint::action::ModifyGeneralSettingsAction

||o*org::openscience::cdk::applications::jchempaint::action::NewAction

||o*org::openscience::cdk::applications::jchempaint::action::OpenAction

||o*org::openscience::cdk::applications::jchempaint::action::PerceiveAtomTypesAction

||o*org::openscience::cdk::applications::jchempaint::action::PreferencesAction

||o*org::openscience::cdk::applications::jchempaint::action::PrintAction

||o*org::openscience::cdk::applications::jchempaint::action::RedoAction

||o+org::openscience::cdk::applications::jchempaint::action::SaveAsAction

||o*org::openscience::cdk::applications::jchempaint::action::SetColorSchemeAction

||o*org::openscience::cdk::applications::jchempaint::action::ShowChemObjectDumpAction

||o*org::openscience::cdk::applications::jchempaint::action::ShowChemObjectProperty

||o*org::openscience::cdk::applications::jchempaint::action::ShowDictionariesAction

||o*org::openscience::cdk::applications::jchempaint::action::StatusBarAction

||o*org::openscience::cdk::applications::jchempaint::action::ToolBarAction

||o*org::openscience::cdk::applications::jchempaint::action::UndoAction

||o*org::openscience::cdk::applications::jchempaint::action::ValidateAction

||o*org::openscience::cdk::applications::jchempaint::action::WebLinkAction

||\*org::openscience::cdk::applications::jchempaint::action::ZoomAction

|o*org::openscience::cdk::applications::jchempaint::JCPConstants

|o*org::openscience::cdk::applications::jchempaint::io::JCPFileView

|o*org::openscience::cdk::applications::jchempaint::JCPLocalizationHandler

|o*org::openscience::cdk::applications::jchempaint::JCPPropertyHandler

|o*org::openscience::cdk::applications::jchempaint::dnd::JCPTransferHandler

|o*org::openscience::cdk::applications::swing::JExternalFrame

|o*org::openscience::cdk::geometry::alignment::KabschAlignment

|o*org::openscience::cdk::applications::jchempaint::dialogs::LicenseDialog

|o*org::openscience::cdk::qsar::model::R::LinearRegressionModelFit

|o*org::openscience::cdk::qsar::model::R::LinearRegressionModelPredict

|o*org::openscience::cdk::qsar::model::R::LinearRegressionModelSummary

|o*org::openscience::cdk::modeling::forcefield::LineSearch

|o*org::openscience::cdk::modeling::forcefield::LineSearchForTheWolfeConditions

|o+org::openscience::cdk::applications::swing::ListeningTableModel

|o*org::openscience::cdk::tools::LoggingTool

|o*org::openscience::cdk::tools::LonePairElectronChecker

|o*net::sf::cdk::tools::MakeJavafilesFiles

|o*net::sf::cdk::tools::MakeRequiresfilesFiles

|o*org::openscience::cdk::Mapping::ChemObjectIterator

|o*org::openscience::cdk::math::MathTools

|o*org::openscience::cdk::math::Matrix

|o*org::openscience::cdk::applications::undoredo::MergeMoleculesEdit

|o*org::openscience::cdk::tools::MFAnalyser

|o*org::openscience::cdk::graph::MinimalPathIterator

|o*org::openscience::cdk::modeling::builder3d::MM2BasedAtomTypePattern

|o*org::openscience::cdk::modeling::builder3d::MM2BasedParameterSetReader

|o*org::openscience::cdk::modeling::builder3d::MMFF94BasedAtomTypePattern

|o*org::openscience::cdk::modeling::builder3d::MMFF94BasedParameterSetReader

|o*org::openscience::cdk::modeling::builder3d::MMFF94ParametersCall

|o*org::openscience::cdk::charges::MMFF94PartialCharges

|o*org::openscience::cdk::modeling::builder3d::ModelBuilder3D

|o*org::openscience::cdk::applications::jchempaint::dialogs::ModifyGeneralSettingsDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::ModifyRenderOptionsDialog

|o*org::openscience::cdk::iupac::parser::MoleculeBuilder

|o*org::openscience::cdk::templates::MoleculeFactory

|o*org::openscience::cdk::tools::features::MoleculeFeaturesTool

|o*org::openscience::cdk::graph::MoleculeGraphs

|o*org::openscience::cdk::applications::swing::MoleculeListPanel

|o*org::openscience::cdk::applications::swing::MoleculeListPanel::StrucContainer

|o*org::openscience::cdk::applications::swing::MoleculeListViewer

|o*org::openscience::cdk::tools::manipulator::MoleculeSetManipulator

|o*org::openscience::cdk::graph::invariant::MorganNumbersTools

|o*org::openscience::cdk::applications::undoredo::MoveAtomEdit

|o*org::openscience::cdk::geometry::surface::NeighborList

|o*org::openscience::cdk::modeling::forcefield::NewtonRaphsonMethod

|o+org::openscience::cdk::iupac::parser::NomParserConstants

|o*org::openscience::cdk::tools::Normalizer

|o*org::openscience::cdk::geometry::surface::NumericalSurface

|o*org::openscience::cdk::math::qm::OneElectronJob

|o*org::openscience::cdk::libio::openbabel::OpenBabelConvert

|o*org::openscience::cdk::isomorphism::matchers::smarts::OperatorContainer

|o*org::openscience::cdk::math::qm::Orbitals

|o*org::openscience::cdk::layout::OverlapResolver

|o*org::openscience::cdk::layout::OverlapResolver::OverlapPair

|o*org::openscience::cdk::iupac::parser::ParseException

|o*org::openscience::cdk::structgen::stochastic::PartialFilledStructureMerger

|o*org::openscience::cdk::ringsearch::Path

|o*org::openscience::cdk::graph::PathTools

|o*org::openscience::cdk::applications::swing::PeriodicTablePanel

|o*org::openscience::cdk::applications::swing::PeriodicTablePanel::BackAction

|o*org::openscience::cdk::applications::swing::PeriodicTablePanel::ElementButtonAction

|o*org::openscience::cdk::PhysicalConstants

|o*org::openscience::cdk::qsar::model::R::PLSRegressionModelPredict

|o*org::openscience::cdk::applications::plugin::PluginClassLoader

|o*org::openscience::cdk::charges::Polarizability

|o*org::openscience::cdk::math::Primes

|o*org::openscience::cdk::validate::ProblemMarker

|o*org::openscience::cdk::geometry::Projector

|o*org::openscience::cdk::tools::ProteinBuilderTool

|o*org::openscience::cdk::protein::ProteinPocketFinder

|o*org::openscience::cdk::applications::jchempaint::dialogs::PTDialog

|o*org::openscience::cdk::math::Quaternion

|o*org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator

|o*org::openscience::cdk::ringsearch::Queue

|o*org::openscience::cdk::structgen::RandomGenerator

|o*org::openscience::cdk::math::RandomNumbersTool

|o*org::openscience::cdk::geometry::RDFCalculator

|o*org::openscience::cdk::Reaction::MappingIterator

|o*org::openscience::cdk::tools::manipulator::ReactionManipulator

|o*org::openscience::cdk::ReactionSet::ReactionIterator

|o*org::openscience::cdk::tools::manipulator::ReactionSetManipulator

|o*org::openscience::cdk::io::ReaderEvent

|o*org::openscience::cdk::io::ReaderFactory

|o*org::openscience::cdk::graph::rebond::RebondTool

|o*org::openscience::cdk::applications::undoredo::RemoveAtomsAndBondsEdit

|o*org::openscience::cdk::renderer::Renderer2DModel

|o*org::openscience::cdk::isomorphism::mcss::RGraph

|o*org::openscience::cdk::ringsearch::RingPartitioner

|o*org::openscience::cdk::layout::RingPlacer

|o*org::openscience::cdk::tools::manipulator::RingSetManipulator

|o*org::openscience::cdk::tools::manipulator::RingSizeComparator

|o*org::openscience::cdk::isomorphism::mcss::RMap

|o*org::openscience::cdk::isomorphism::mcss::RNode

|o*org::openscience::cdk::applications::SDFSubstructureFinder

|o*org::openscience::cdk::iupac::parser::SimpleCharStream

|o*org::openscience::cdk::ringsearch::cyclebasis::SimpleCycle

|o*org::openscience::cdk::ringsearch::cyclebasis::SimpleCycleBasis

|o*org::openscience::cdk::structgen::SingleStructureRandomGenerator

|o*org::openscience::cdk::smiles::SmilesGenerator

|o+org::openscience::cdk::smiles::SmilesParser

|o*org::openscience::cdk::applications::demo::SmilesViewerforDeterministicGenerator

|o*org::openscience::cdk::modeling::forcefield::SmoothingFunctions

|o*org::openscience::cdk::graph::SpanningTree

|o*org::openscience::cdk::ringsearch::SSSRFinder

|o*org::openscience::cdk::fingerprint::StandardSubstructureSets

|o+org::openscience::cdk::applications::jchempaint::StatusBar

|o*org::openscience::cdk::modeling::forcefield::SteepestDescentsMethod

|o*org::openscience::cdk::modeling::forcefield::StretchBendInteractions

|o*org::openscience::cdk::applications::jchempaint::StringHelper

|o*org::openscience::cdk::layout::StructureDiagramGenerator

|o*org::openscience::cdk::tools::StructureResonanceGenerator

|o*org::openscience::cdk::tools::SwissArmyKnife

|o*org::openscience::cdk::config::Symbols

|o*org::openscience::cdk::similarity::Tanimoto

|o*org::openscience::cdk::applications::TanimotoCoefficient

|o*org::openscience::cdk::modeling::builder3d::TemplateExtractor

|o*org::openscience::cdk::layout::TemplateHandler

|o*org::openscience::cdk::modeling::builder3d::TemplateHandler3D

|o*org::openscience::cdk::geometry::surface::Tessellate

|o*org::openscience::cdk::applications::jchempaint::dialogs::TextViewDialog

|o*org::openscience::cdk::iupac::parser::Token

|o*org::openscience::cdk::applications::jchempaint::ToolBarMaker

|o*org::openscience::cdk::modeling::forcefield::Torsions

|o*org::openscience::cdk::geometry::surface::Triangle

|o*org::openscience::cdk::applications::undoredo::UndoAdapter

|o*org::openscience::cdk::applications::jchempaint::UndoStack

|o*org::openscience::cdk::isomorphism::UniversalIsomorphismTester

|o*org::openscience::cdk::qsar::model::R::V2M

|o*org::openscience::cdk::applications::jchempaint::dialogs::ValidateFrame

|o*org::openscience::cdk::validate::ValidationReport

|o*org::openscience::cdk::validate::ValidationTest

|o*org::openscience::cdk::applications::Validator

|o*org::openscience::cdk::modeling::forcefield::VanDerWaalsInteractions

|o*org::openscience::cdk::math::Vector

|o*org::openscience::cdk::Vibration

|o*org::openscience::cdk::structgen::VicinitySampler

|o*org::openscience::cdk::applications::jchempaint::dialogs::WebDialog

|o*org::openscience::cdk::applications::jchempaint::dialogs::WebDialog::PageLoader

|o*org::openscience::cdk::io::WriterFactory

|o*org::openscience::cdk::internet::WWMMatrixReader

|o*org::openscience::cdk::database::XindiceReader

|\*org::openscience::cdk::geometry::ZMatrixTools

o*Class Members

o+File List

|o*cdk-1.0.2/src/net/sf/cdk/tools/MakeJavafilesFiles.java

|o*cdk-1.0.2/src/net/sf/cdk/tools/MakeRequiresfilesFiles.java

|o*cdk-1.0.2/src/net/sf/cdk/tools/bibtex/BibTeXMLEntry.java

|o*cdk-1.0.2/src/net/sf/cdk/tools/bibtex/BibTeXMLFile.java

|o*cdk-1.0.2/src/net/sf/cdk/tools/doclets/CDKBugTaglet.java

|o*cdk-1.0.2/src/net/sf/cdk/tools/doclets/CDKCiteTaglet.java

|o*cdk-1.0.2/src/net/sf/cdk/tools/doclets/CDKDictRefTaglet.java

|o*cdk-1.0.2/src/net/sf/cdk/tools/doclets/CDKModuleTaglet.java

|o*cdk-1.0.2/src/org/openscience/cdk/AminoAcid.java

|o*cdk-1.0.2/src/org/openscience/cdk/Association.java

|o*cdk-1.0.2/src/org/openscience/cdk/Atom.java

|o*cdk-1.0.2/src/org/openscience/cdk/AtomContainer.java

|o*cdk-1.0.2/src/org/openscience/cdk/AtomContainerSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/AtomParity.java

|o*cdk-1.0.2/src/org/openscience/cdk/AtomType.java

|o*cdk-1.0.2/src/org/openscience/cdk/BioPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/Bond.java

|o*cdk-1.0.2/src/org/openscience/cdk/CDKConstants.java

|o*cdk-1.0.2/src/org/openscience/cdk/ChemFile.java

|o*cdk-1.0.2/src/org/openscience/cdk/ChemModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/ChemObject.java

|o*cdk-1.0.2/src/org/openscience/cdk/ChemSequence.java

|o*cdk-1.0.2/src/org/openscience/cdk/Crystal.java

|o*cdk-1.0.2/src/org/openscience/cdk/DefaultChemObjectBuilder.java

|o*cdk-1.0.2/src/org/openscience/cdk/ElectronContainer.java

|o*cdk-1.0.2/src/org/openscience/cdk/Element.java

|o*cdk-1.0.2/src/org/openscience/cdk/EnzymeResidueLocator.java

|o*cdk-1.0.2/src/org/openscience/cdk/Fragment.java

|o*cdk-1.0.2/src/org/openscience/cdk/FragmentAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/IImplementationSpecification.java

|o*cdk-1.0.2/src/org/openscience/cdk/Isotope.java

|o*cdk-1.0.2/src/org/openscience/cdk/LonePair.java

|o*cdk-1.0.2/src/org/openscience/cdk/Mapping.java

|o*cdk-1.0.2/src/org/openscience/cdk/Molecule.java

|o*cdk-1.0.2/src/org/openscience/cdk/MoleculeSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/Monomer.java

|o*cdk-1.0.2/src/org/openscience/cdk/PeriodicTableElement.java

|o*cdk-1.0.2/src/org/openscience/cdk/PhysicalConstants.java

|o*cdk-1.0.2/src/org/openscience/cdk/Polymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/PseudoAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/Reaction.java

|o*cdk-1.0.2/src/org/openscience/cdk/ReactionSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/Ring.java

|o*cdk-1.0.2/src/org/openscience/cdk/RingSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/SingleElectron.java

|o*cdk-1.0.2/src/org/openscience/cdk/Strand.java

|o*cdk-1.0.2/src/org/openscience/cdk/Vibration.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/APIVersionTester.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/DescriptorCalculator.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/DistLargeInfo.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/File2Text.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/FileConvertor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/FileFormatGuesser.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/FingerPrinter.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/SDFSubstructureFinder.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/TanimotoCoefficient.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/Validator.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/demo/EventCMLDemo.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/demo/SmilesViewerforDeterministicGenerator.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/DevelStatusBar.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/DrawingPanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/InsertTextPanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JChemPaintEditorPanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JChemPaintMenuBar.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JChemPaintModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JChemPaintPanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JChemPaintPopupMenu.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JChemPaintViewerOnlyPanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JCPConstants.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JCPLocalizationHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/JCPPropertyHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/StatusBar.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/StringHelper.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/ToolBarMaker.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/UndoStack.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/AboutAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/AddHydrogenAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/AdjustBondOrdersAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ChangeAtomSymbolAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ChangeIsotopeAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ChemAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/CleanupAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/CloseAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ConvertToAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ConvertToPseudoAtomAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ConvertToRadicalAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/CopyPasteAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/CreateInChIAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/CreateReactionAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/CreateSmilesAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/DictionaryAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/EditAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/EditAtomContainerPropsAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/EditChemObjectPropsAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/EditDictRefsAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ElementAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ExitAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ExportAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ExportCompChemAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/FlipAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/HelpAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/InsertSmilesAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/InsertStructureAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/JCPAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/LicenseAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/MenuBarAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ModelPropsAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ModifyDisplaySettingsAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ModifyGeneralSettingsAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/NewAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/OpenAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/PerceiveAtomTypesAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/PreferencesAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/PrintAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/RedoAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/SaveAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/SaveAsAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/SetColorSchemeAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ShowChemObjectDumpAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ShowChemObjectProperty.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ShowDictionariesAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/StatusBarAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ToolBarAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/UndoAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ValidateAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/WebLinkAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/action/ZoomAction.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/applet/AppletCanvas.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/applet/JChemPaintAbstractApplet.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/applet/JChemPaintEditorApplet.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/applet/JChemPaintViewerOnlyApplet.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/application/JChemPaint.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/AboutDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/ChemObjectPropertyDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/CreateCoordinatesForFileDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/DictionaryDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/EditDictRefs.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/GeneralFieldEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/GeneralSettingsEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/HelpDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/InfoDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/JChemPaintModelPropsEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/LicenseDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/ModifyGeneralSettingsDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/ModifyRenderOptionsDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/PTDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/TextViewDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/ValidateFrame.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dialogs/WebDialog.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/dnd/JCPTransferHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/io/IJCPFileFilter.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/io/JCPCompChemInputSaveFileFilter.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/io/JCPExportFileFilter.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/io/JCPFileFilter.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/io/JCPFileView.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/jchempaint/io/JCPSaveFileFilter.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/plugin/CDKPluginManager.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/plugin/ICDKEditBus.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/plugin/ICDKPlugin.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/plugin/PluginClassLoader.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/AtomicTable.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/ChemObjectPropertyEditorTableModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/ChemObjectTree.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/ChemObjectTreeNode.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/DictRefEditorTableModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/FieldTablePanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/GraphRenderer.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/JExternalFrame.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/ListeningTableModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/MoleculeListPanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/MoleculeListViewer.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/MoleculesTable.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/MoleculeViewer2D.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/MoleculeViewer2DPanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/PeriodicTablePanel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/SortedTableModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/AtomContainerEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/AtomEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/BondEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/ChemObjectEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/Controller2DModelEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/PseudoAtomEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/ReactionEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/swing/editor/Renderer2DModelEditor.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/AddAtomsAndBondsEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/AddFuncGroupEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/AddHydrogenEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/AdjustBondOrdersEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/BondChangeEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/ChangeAtomSymbolEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/ChangeChargeEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/ChangeCoordsEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/ChangeIsotopeEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/CleanUpEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/ClearAllEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/ConvertToPseudoAtomEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/ConvertToRadicalEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/FlipEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/IUndoRedoHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/JCPUndoRedoHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/MergeMoleculesEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/MoveAtomEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/RemoveAtomsAndBondsEdit.java

|o*cdk-1.0.2/src/org/openscience/cdk/applications/undoredo/UndoAdapter.java

|o*cdk-1.0.2/src/org/openscience/cdk/aromaticity/AromaticityCalculator.java

|o*cdk-1.0.2/src/org/openscience/cdk/aromaticity/HueckelAromaticityDetector.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/EStateAtomTypeMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/HybridizationMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/HybridizationStateATMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/IAtomTypeGuesser.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/IAtomTypeMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/MM2AtomTypeMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/MMFF94AtomTypeMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/StructGenAtomTypeGuesser.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/StructGenMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/atomtype/ValencyMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/charges/AtomTypeCharges.java

|o*cdk-1.0.2/src/org/openscience/cdk/charges/GasteigerMarsiliPartialCharges.java

|o*cdk-1.0.2/src/org/openscience/cdk/charges/GasteigerPEPEPartialCharges.java

|o*cdk-1.0.2/src/org/openscience/cdk/charges/InductivePartialCharges.java

|o*cdk-1.0.2/src/org/openscience/cdk/charges/MMFF94PartialCharges.java

|o*cdk-1.0.2/src/org/openscience/cdk/charges/Polarizability.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/AtomTypeFactory.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/CDKBasedAtomTypeConfigurator.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/ElementPTFactory.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/Elements.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/IAtomTypeConfigurator.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/IsotopeFactory.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/Symbols.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/TXTBasedAtomTypeConfigurator.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/atomtypes/AtomTypeHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/atomtypes/AtomTypeReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/elements/ElementPTHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/elements/ElementPTReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/isotopes/IsotopeHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/config/isotopes/IsotopeReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/controller/AbstractController2D.java

|o*cdk-1.0.2/src/org/openscience/cdk/controller/CDKPopupMenu.java

|o*cdk-1.0.2/src/org/openscience/cdk/controller/Controller2D.java

|o*cdk-1.0.2/src/org/openscience/cdk/controller/Controller2DModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/controller/PopupController2D.java

|o*cdk-1.0.2/src/org/openscience/cdk/controller/SimpleController2D.java

|o*cdk-1.0.2/src/org/openscience/cdk/database/XindiceReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugAminoAcid.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugAtomContainer.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugAtomContainerSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugAtomParity.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugAtomType.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugBioPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugBond.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugChemFile.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugChemModel.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugChemObject.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugChemObjectBuilder.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugChemSequence.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugCrystal.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugElectronContainer.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugElement.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugIsotope.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugLonePair.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugMapping.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugMolecule.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugMoleculeSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugMonomer.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugPDBAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugPDBMonomer.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugPDBPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugPDBStructure.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugPseudoAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugReaction.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugReactionSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugRing.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugRingSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugSingleElectron.java

|o*cdk-1.0.2/src/org/openscience/cdk/debug/DebugStrand.java

|o*cdk-1.0.2/src/org/openscience/cdk/dict/CDKDictionaryReferences.java

|o*cdk-1.0.2/src/org/openscience/cdk/dict/Dictionary.java

|o*cdk-1.0.2/src/org/openscience/cdk/dict/DictionaryDatabase.java

|o*cdk-1.0.2/src/org/openscience/cdk/dict/DictionaryHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/dict/DictRef.java

|o*cdk-1.0.2/src/org/openscience/cdk/dict/Entry.java

|o*cdk-1.0.2/src/org/openscience/cdk/dict/OWLFile.java

|o*cdk-1.0.2/src/org/openscience/cdk/event/ChemObjectChangeEvent.java

|o*cdk-1.0.2/src/org/openscience/cdk/event/ICDKChangeListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/event/ICDKSelectionChangeListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/exception/CDKException.java

|o*cdk-1.0.2/src/org/openscience/cdk/exception/IncorrectUseOfCDKCoreClassError.java

|o*cdk-1.0.2/src/org/openscience/cdk/exception/InvalidSmilesException.java

|o*cdk-1.0.2/src/org/openscience/cdk/exception/NoSuchAtomException.java

|o*cdk-1.0.2/src/org/openscience/cdk/exception/NoSuchAtomTypeException.java

|o*cdk-1.0.2/src/org/openscience/cdk/exception/UnsupportedChemObjectException.java

|o*cdk-1.0.2/src/org/openscience/cdk/fingerprint/ExtendedFingerprinter.java

|o*cdk-1.0.2/src/org/openscience/cdk/fingerprint/Fingerprinter.java

|o*cdk-1.0.2/src/org/openscience/cdk/fingerprint/FingerprinterTool.java

|o*cdk-1.0.2/src/org/openscience/cdk/fingerprint/GraphOnlyFingerprinter.java

|o*cdk-1.0.2/src/org/openscience/cdk/fingerprint/IFingerprinter.java

|o*cdk-1.0.2/src/org/openscience/cdk/fingerprint/StandardSubstructureSets.java

|o*cdk-1.0.2/src/org/openscience/cdk/fingerprint/SubstructureFingerprinter.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/AtomTools.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/BondTools.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/CrystalGeometryTools.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/GeometryTools.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/GeometryToolsInternalCoordinates.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/IRDFWeightFunction.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/Projector.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/RDFCalculator.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/ZMatrixTools.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/alignment/KabschAlignment.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/surface/NeighborList.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/surface/NumericalSurface.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/surface/Tessellate.java

|o*cdk-1.0.2/src/org/openscience/cdk/geometry/surface/Triangle.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/AtomContainerAtomPermutor.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/AtomContainerBondPermutor.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/AtomContainerPermutor.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/BFSShortestPath.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/BiconnectivityInspector.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/ConnectivityChecker.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/MinimalPathIterator.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/MoleculeGraphs.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/PathTools.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/SpanningTree.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/CanonicalLabeler.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/ConjugatedPiSystemsDetector.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/EquivalentClassPartitioner.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/GIMatrix.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/HuLuIndexTool.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/MorganNumbersTools.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/exception/BadMatrixFormatException.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/exception/IndexOutOfBoundsException.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/invariant/exception/MatrixNotInvertibleException.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/matrix/AdjacencyMatrix.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/matrix/ConnectionMatrix.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/matrix/IGraphMatrix.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/matrix/TopologicalMatrix.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/rebond/Bspt.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/rebond/Point.java

|o*cdk-1.0.2/src/org/openscience/cdk/graph/rebond/RebondTool.java

|o*cdk-1.0.2/src/org/openscience/cdk/inchi/InChIGenerator.java

|o*cdk-1.0.2/src/org/openscience/cdk/inchi/InChIGeneratorFactory.java

|o*cdk-1.0.2/src/org/openscience/cdk/inchi/InChIToStructure.java

|o*cdk-1.0.2/src/org/openscience/cdk/index/CASNumber.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IAminoAcid.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IAtomContainer.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IAtomContainerSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IAtomParity.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IAtomType.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IBioPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IBond.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IChemFile.java

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|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IChemObjectBuilder.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IChemObjectChangeEvent.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IChemObjectListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IChemSequence.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/ICrystal.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IElectronContainer.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IElement.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IIsotope.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/ILonePair.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IMapping.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IMolecule.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IMoleculeSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IMonomer.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IPDBAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IPDBMonomer.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IPDBPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IPDBStructure.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IPseudoAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IReaction.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IReactionSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IRing.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IRingSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/ISingleElectron.java

|o*cdk-1.0.2/src/org/openscience/cdk/interfaces/IStrand.java

|o*cdk-1.0.2/src/org/openscience/cdk/internet/DADMLReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/internet/DADMLResult.java

|o*cdk-1.0.2/src/org/openscience/cdk/internet/WWMMatrixReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/CDKSourceCodeWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/CIFReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/CMLReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/CMLWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/CrystClustReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/CrystClustWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/CTXReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/DefaultChemObjectReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/DefaultChemObjectWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/GamessReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/Gaussian03Reader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/Gaussian98Reader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/GhemicalMMReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/HINReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/HINWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/IChemObjectIO.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/IChemObjectReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/IChemObjectWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/INChIPlainTextReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/INChIReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/MACiEReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/MDLReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/MDLRXNReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/MDLRXNV2000Reader.java

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|o*cdk-1.0.2/src/org/openscience/cdk/io/MDLRXNWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/MDLV2000Reader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/MDLV3000Reader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/MDLWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/Mol2Reader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/Mol2Writer.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/PCCompoundASNReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/PDBReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/PDBWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/PMPReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/ReaderEvent.java

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|o*cdk-1.0.2/src/org/openscience/cdk/io/RssWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/ShelXReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/ShelXWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/SMILESReader.java

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|o*cdk-1.0.2/src/org/openscience/cdk/io/SVGWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/VASPReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/WriterFactory.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/XYZReader.java

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|o*cdk-1.0.2/src/org/openscience/cdk/io/ZMatrixReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/CDKConvention.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/CMLCoreModule.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/CMLErrorHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/CMLHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/CMLReactionModule.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/CMLResolver.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/CMLStack.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/ICMLConvention.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/ICMLModule.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/JMOLANIMATIONConvention.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/MDLMolConvention.java

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|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/PDBConvention.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/PMPConvention.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/cml/QSARConvention.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ABINITFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Aces2Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ADFFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/AlchemyFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/BGFFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/BSFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CacaoCartesianFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CacaoInternalFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CACheFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CDKSourceCodeFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Chem3D_Cartesian_1Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Chem3D_Cartesian_2Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ChemDrawFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ChemtoolFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CIFFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CMLFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CMLRSSFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CRK2DFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CRK3DFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CrystClustFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/CTXFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/DaltonFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/DMol3Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/DOCK5Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/FenskeHall_ZMatrixFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/FingerprintFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/GamessFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Gaussian03Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Gaussian90Format.java

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|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Gaussian94Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Gaussian95Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Gaussian98Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/GaussianInputFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/GhemicalMMFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/GhemicalSPMFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/GROMOS96Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/HINFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/IChemFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/IChemFormatMatcher.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/INChIFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/INChIPlainTextFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/IResourceFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/JaguarFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/JMEFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MACiEFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MacroModelFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MDLFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MDLRXNFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MDLRXNV3000Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MDLV2000Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MDLV3000Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MMODFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/Mol2Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MOPAC2002Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MOPAC7Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MOPAC93Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MOPAC97Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/MPQCFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/NWChemFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/PCModelFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/PDBFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/PDBMLFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/PMPFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/POVRayFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/PQSChemFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/PubChemASNFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/PubChemFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/QChemFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/RawCopyFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/SDFFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ShelXFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/SMARTSFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/SMILESFIXFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/SMILESFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/SpartanFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/SVGFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/SybylDescriptorFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/TinkerMM2Format.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/TinkerXYZFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/TurboMoleFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/UniChemXYZFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/VASPFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ViewmolFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/XEDFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/XYZFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/YasaraFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ZindoFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/formats/ZMatrixFormat.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/inchi/INChIContentProcessorTool.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/inchi/INChIHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/iterator/DefaultIteratingChemObjectReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/iterator/IIteratingChemObjectReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/iterator/IteratingMDLReader.java

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|o*cdk-1.0.2/src/org/openscience/cdk/io/iterator/event/DefaultEventChemObjectReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/iterator/event/EventCMLHandler.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/iterator/event/EventCMLReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/iterator/event/IEventChemObjectReader.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/listener/IChemObjectIOListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/listener/IReaderListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/listener/IWriterListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/listener/PropertiesListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/listener/SwingGUIListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/listener/TextGUIListener.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/program/GaussianInputWriter.java

|o*cdk-1.0.2/src/org/openscience/cdk/io/setting/BooleanIOSetting.java

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|o*cdk-1.0.2/src/org/openscience/cdk/isomorphism/IsomorphismTester.java

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|o*cdk-1.0.2/src/org/openscience/cdk/isomorphism/matchers/smarts/TotalValencyAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/isomorphism/mcss/RGraph.java

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|o*cdk-1.0.2/src/org/openscience/cdk/iupac/parser/AttachedGroup.java

|o*cdk-1.0.2/src/org/openscience/cdk/iupac/parser/MoleculeBuilder.java

|o*cdk-1.0.2/src/org/openscience/cdk/iupac/parser/NomParser.java

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|o*cdk-1.0.2/src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java

|o*cdk-1.0.2/src/org/openscience/cdk/iupac/parser/ParseException.java

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|o*cdk-1.0.2/src/org/openscience/cdk/iupac/parser/TokenMgrError.java

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|o*cdk-1.0.2/src/org/openscience/cdk/libio/openbabel/OpenBabelConvert.java

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|o*cdk-1.0.2/src/org/openscience/cdk/modeling/forcefield/IPotentialFunction.java

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|o*cdk-1.0.2/src/org/openscience/cdk/modeling/forcefield/NewtonRaphsonMethod.java

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|o*cdk-1.0.2/src/org/openscience/cdk/modeling/forcefield/VanDerWaalsInteractions.java

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|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNMonomer.java

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|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNPDBPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNPDBStructure.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNPseudoAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNReaction.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNReactionSet.java

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|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNRingSet.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNSingleElectron.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NNStrand.java

|o*cdk-1.0.2/src/org/openscience/cdk/nonotify/NoNotificationChemObjectBuilder.java

|o*cdk-1.0.2/src/org/openscience/cdk/protein/ProteinPocketFinder.java

|o*cdk-1.0.2/src/org/openscience/cdk/protein/data/PDBAtom.java

|o*cdk-1.0.2/src/org/openscience/cdk/protein/data/PDBMonomer.java

|o*cdk-1.0.2/src/org/openscience/cdk/protein/data/PDBPolymer.java

|o*cdk-1.0.2/src/org/openscience/cdk/protein/data/PDBStrand.java

|o*cdk-1.0.2/src/org/openscience/cdk/protein/data/PDBStructure.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/AbstractAtomicDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/AbstractBondDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/ChiIndexUtils.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/DescriptorEngine.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/DescriptorException.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/DescriptorSpecification.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/DescriptorValue.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/IAtomicDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/IAtomPairDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/IBondDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/IDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/IMolecularDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/descriptors/atomic/AtomDegreeDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/descriptors/atomic/AtomHybridizationDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/descriptors/atomic/AtomHybridizationVSEPRDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/descriptors/atomic/AtomValenceDescriptor.java

|o*cdk-1.0.2/src/org/openscience/cdk/qsar/descriptors/atomic/BondsToAtomDescriptor.java