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org::openscience::cdk::interfaces::IPDBAtom Interface Reference

Inheritance diagram for org::openscience::cdk::interfaces::IPDBAtom:

org::openscience::cdk::interfaces::IAtom org::openscience::cdk::interfaces::IAtomType org::openscience::cdk::interfaces::IIsotope org::openscience::cdk::interfaces::IElement org::openscience::cdk::interfaces::IChemObject org::openscience::cdk::debug::DebugPDBAtom org::openscience::cdk::protein::data::PDBAtom org::openscience::cdk::debug::DebugPDBAtom org::openscience::cdk::nonotify::NNPDBAtom

List of all members.


Detailed Description

A PDBAtom is a subclass of a Atom which is supposed to store additional informations about the Atom

.module interfaces

Author:
Miguel Rojas <miguel.rojas@uni-koeln.de> .created 2006-11-20
.keyword pdbpolymer

Definition at line 37 of file IPDBAtom.java.


Public Member Functions

void addListener (IChemObjectListener col)
Object clone () throws CloneNotSupportedException
String getAltLoc ()
int getAtomicNumber ()
String getAtomTypeName ()
double getBondOrderSum ()
IChemObjectBuilder getBuilder ()
String getChainID ()
double getCharge ()
double getCovalentRadius ()
double getExactMass ()
boolean getFlag (int flag_type)
boolean[] getFlags ()
int getFormalCharge ()
int getFormalNeighbourCount ()
Point3d getFractionalPoint3d ()
boolean getHetAtom ()
int getHybridization ()
int getHydrogenCount ()
String getICode ()
String getID ()
int getListenerCount ()
int getMassNumber ()
double getMaxBondOrder ()
String getName ()
double getNaturalAbundance ()
boolean getNotification ()
double getOccupancy ()
boolean getOxt ()
Point2d getPoint2d ()
Point3d getPoint3d ()
Hashtable getProperties ()
Object getProperty (Object description)
String getRecord ()
String getResName ()
String getResSeq ()
String getSegID ()
int getSerial ()
int getStereoParity ()
String getSymbol ()
double getTempFactor ()
int getValency ()
double getVanderwaalsRadius ()
void notifyChanged (IChemObjectChangeEvent evt)
void notifyChanged ()
void removeListener (IChemObjectListener col)
void removeProperty (Object description)
void setAltLoc (String newAltLoc)
void setAtomicNumber (int atomicNumber)
void setAtomTypeName (String identifier)
void setBondOrderSum (double bondOrderSum)
void setChainID (String newChainID)
void setCharge (double charge)
void setCovalentRadius (double radius)
void setExactMass (double exactMass)
void setFlag (int flag_type, boolean flag_value)
void setFlags (boolean[] flagsNew)
void setFormalCharge (int charge)
void setFormalNeighbourCount (int count)
void setFractionalPoint3d (Point3d point3d)
void setHetAtom (boolean newHetAtom)
void setHybridization (int hybridization)
void setHydrogenCount (int hydrogenCount)
void setICode (String newICode)
void setID (String identifier)
void setMassNumber (int massNumber)
void setMaxBondOrder (double maxBondOrder)
void setName (String newName)
void setNaturalAbundance (double naturalAbundance)
void setNotification (boolean bool)
void setOccupancy (double newOccupancy)
void setOxt (boolean newOxt)
void setPoint2d (Point2d point2d)
void setPoint3d (Point3d point3d)
void setProperties (Hashtable properties)
void setProperty (Object description, Object property)
void setRecord (String newRecord)
void setResName (String newResName)
void setResSeq (String newResSeq)
void setSegID (String newSegID)
void setSerial (int newSerial)
void setStereoParity (int stereoParity)
void setSymbol (String symbol)
void setTempFactor (double newTempFactor)
void setValency (int valency)
void setVanderwaalsRadius (double radius)
String toString ()

The documentation for this interface was generated from the following file:

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