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IChemObjectBuilder org::openscience::cdk::interfaces::IChemObject::getBuilder (  )  [inherited]

Returns a ChemObjectBuilder for the data classes that extend this class.

Returns:
The IChemObjectBuilder matching this IChemObject

Implemented in org::openscience::cdk::ChemObject, org::openscience::cdk::debug::DebugAminoAcid, org::openscience::cdk::debug::DebugAtom, org::openscience::cdk::debug::DebugAtomContainer, org::openscience::cdk::debug::DebugAtomContainerSet, org::openscience::cdk::debug::DebugAtomParity, org::openscience::cdk::debug::DebugAtomType, org::openscience::cdk::debug::DebugBioPolymer, org::openscience::cdk::debug::DebugBond, org::openscience::cdk::debug::DebugChemFile, org::openscience::cdk::debug::DebugChemModel, org::openscience::cdk::debug::DebugChemObject, org::openscience::cdk::debug::DebugChemSequence, org::openscience::cdk::debug::DebugCrystal, org::openscience::cdk::debug::DebugElectronContainer, org::openscience::cdk::debug::DebugElement, org::openscience::cdk::debug::DebugIsotope, org::openscience::cdk::debug::DebugLonePair, org::openscience::cdk::debug::DebugMapping, org::openscience::cdk::debug::DebugMolecule, org::openscience::cdk::debug::DebugMoleculeSet, org::openscience::cdk::debug::DebugMonomer, org::openscience::cdk::debug::DebugPolymer, org::openscience::cdk::debug::DebugPseudoAtom, org::openscience::cdk::debug::DebugReaction, org::openscience::cdk::debug::DebugReactionSet, org::openscience::cdk::debug::DebugRing, org::openscience::cdk::debug::DebugSingleElectron, org::openscience::cdk::debug::DebugStrand, org::openscience::cdk::nonotify::NNAminoAcid, org::openscience::cdk::nonotify::NNAtom, org::openscience::cdk::nonotify::NNAtomContainer, org::openscience::cdk::nonotify::NNAtomContainerSet, org::openscience::cdk::nonotify::NNAtomParity, org::openscience::cdk::nonotify::NNAtomType, org::openscience::cdk::nonotify::NNBioPolymer, org::openscience::cdk::nonotify::NNBond, org::openscience::cdk::nonotify::NNChemFile, org::openscience::cdk::nonotify::NNChemModel, org::openscience::cdk::nonotify::NNChemObject, org::openscience::cdk::nonotify::NNChemSequence, org::openscience::cdk::nonotify::NNCrystal, org::openscience::cdk::nonotify::NNElectronContainer, org::openscience::cdk::nonotify::NNElement, org::openscience::cdk::nonotify::NNIsotope, org::openscience::cdk::nonotify::NNLonePair, org::openscience::cdk::nonotify::NNMapping, org::openscience::cdk::nonotify::NNMolecule, org::openscience::cdk::nonotify::NNMoleculeSet, org::openscience::cdk::nonotify::NNMonomer, org::openscience::cdk::nonotify::NNPDBAtom, org::openscience::cdk::nonotify::NNPDBMonomer, org::openscience::cdk::nonotify::NNPDBPolymer, org::openscience::cdk::nonotify::NNPDBStructure, org::openscience::cdk::nonotify::NNPolymer, org::openscience::cdk::nonotify::NNPseudoAtom, org::openscience::cdk::nonotify::NNReaction, org::openscience::cdk::nonotify::NNReactionSet, org::openscience::cdk::nonotify::NNRing, org::openscience::cdk::nonotify::NNRingSet, org::openscience::cdk::nonotify::NNSingleElectron, and org::openscience::cdk::nonotify::NNStrand.

Referenced by org::openscience::cdk::applications::jchempaint::action::EditAction::actionPerformed(), org::openscience::cdk::applications::jchempaint::action::CreateReactionAction::actionPerformed(), org::openscience::cdk::applications::jchempaint::action::CleanupAction::actionPerformed(), org::openscience::cdk::applications::jchempaint::action::ChangeAtomSymbolAction::actionPerformed(), org::openscience::cdk::tools::HydrogenAdder::addExplicitHydrogensToSatisfyValency(), org::openscience::cdk::tools::GenerateFragments::addPathFragments(), org::openscience::cdk::qsar::descriptors::molecular::AminoAcidCountDescriptor::AminoAcidCountDescriptor(), org::openscience::cdk::graph::rebond::RebondTool::bondAtom(), org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::bond::ResonancePositiveChargeDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::bond::IPBondDescriptor::calculate(), org::openscience::cdk::qsar::descriptors::atomic::IPAtomicDescriptor::calculate(), org::openscience::cdk::tools::SaturationChecker::calculateNumberOfImplicitHydrogens(), org::openscience::cdk::qsar::descriptors::molecular::IPMolecularDescriptor::calculatePlus(), org::openscience::cdk::applications::FileConvertor::convert(), org::openscience::cdk::ringsearch::RingPartitioner::convertToAtomContainer(), org::openscience::cdk::controller::AbstractController2D::createAttachRing(), org::openscience::cdk::tools::manipulator::ChemModelManipulator::createNewMolecule(), org::openscience::cdk::ringsearch::AllRingsFinder::detectRings(), org::openscience::cdk::structgen::stochastic::operator::CrossoverMachine::doCrossover(), org::openscience::cdk::ringsearch::AllRingsFinder::findAllRings(), org::openscience::cdk::graph::PathTools::findClosestByBond(), org::openscience::cdk::atomtype::EStateAtomTypeMatcher::findMatchingAtomType(), org::openscience::cdk::structgen::SingleStructureRandomGenerator::generate(), org::openscience::cdk::layout::StructureDiagramGenerator::generateExperimentalCoordinates(), org::openscience::cdk::smiles::SmilesGenerator::generateMassString(), org::openscience::cdk::tools::GenerateFragments::generateMurckoFragments(), org::openscience::cdk::tools::manipulator::ChemModelManipulator::getAllAtomContainers(), org::openscience::cdk::tools::manipulator::ReactionManipulator::getAllMolecules(), org::openscience::cdk::tools::manipulator::ReactionManipulator::getAllProducts(), org::openscience::cdk::tools::manipulator::ReactionManipulator::getAllReactants(), org::openscience::cdk::tools::StructureResonanceGenerator::getAllStructures(), org::openscience::cdk::controller::AbstractController2D::getBondInRange(), org::openscience::cdk::controller::AbstractController2D::getConnectedAtomsCenter(), org::openscience::cdk::controller::AbstractController2D::getContainedAtoms(), org::openscience::cdk::graph::SpanningTree::getCyclicFragmentsContainer(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::getElectrostaticPotentialN(), org::openscience::cdk::controller::AbstractController2D::getHighlighted(), org::openscience::cdk::charges::GasteigerPEPEPartialCharges::getHyperconjugationInteractions(), org::openscience::cdk::layout::AtomPlacer::getInitialLongestChain(), org::openscience::cdk::tools::manipulator::AtomContainerManipulator::getIntersection(), org::openscience::cdk::layout::AtomPlacer::getLongestUnplacedChain(), org::openscience::cdk::layout::TemplateHandler::getMappedSubstructures(), org::openscience::cdk::layout::StructureDiagramGenerator::getPlacedAtoms(), org::openscience::cdk::layout::AtomPlacer::getPlacedAtoms(), org::openscience::cdk::applications::jchempaint::JChemPaintModel::getStatus(), org::openscience::cdk::tools::StructureResonanceGenerator::getStructures(), org::openscience::cdk::layout::StructureDiagramGenerator::getUnplacedAtoms(), org::openscience::cdk::reaction::type::RearrangementCation3Reaction::initiate(), org::openscience::cdk::reaction::type::RearrangementAnion3Reaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteInitiationReaction::initiate(), org::openscience::cdk::reaction::type::RadicalSiteInitiationHReaction::initiate(), org::openscience::cdk::reaction::type::HyperconjugationReaction::initiate(), org::openscience::cdk::reaction::type::CleavageBondReaction::initiate(), org::openscience::cdk::reaction::type::CleavageBondMultiReaction::initiate(), org::openscience::cdk::reaction::type::CarbonylEliminationReaction::initiate(), org::openscience::cdk::graph::ConnectivityChecker::isConnected(), org::openscience::cdk::controller::AbstractController2D::keyTyped(), org::openscience::cdk::applications::jchempaint::JChemPaintEditorPanel::layoutInTable(), org::openscience::cdk::layout::StructureDiagramGenerator::layoutNextRingSystem(), org::openscience::cdk::layout::TemplateHandler::mapTemplateExact(), org::openscience::cdk::layout::TemplateHandler::mapTemplates(), org::openscience::cdk::controller::AbstractController2D::mousePressed(), org::openscience::cdk::controller::AbstractController2D::mouseReleased(), org::openscience::cdk::structgen::RandomGenerator::mutate(), org::openscience::cdk::tools::manipulator::ChemModelManipulator::newChemModel(), org::openscience::cdk::renderer::AbstractRenderer2D::paintAtomSymbol(), org::openscience::cdk::renderer::Renderer2D::paintReaction(), org::openscience::cdk::graph::ConnectivityChecker::partitionIntoMolecules(), org::openscience::cdk::ringsearch::RingPartitioner::partitionRings(), org::openscience::cdk::layout::StructureDiagramGenerator::placeFirstBond(), org::openscience::cdk::layout::AtomPlacer::placeLinearChain(), org::openscience::cdk::layout::RingPlacer::placeRingSubstituents(), org::openscience::cdk::io::inchi::INChIContentProcessorTool::processConnections(), org::openscience::cdk::io::inchi::INChIContentProcessorTool::processFormula(), org::openscience::cdk::isomorphism::UniversalIsomorphismTester::project(), org::openscience::cdk::io::SMILESReader::read(), org::openscience::cdk::io::Mol2Reader::read(), org::openscience::cdk::io::MDLRXNV2000Reader::read(), org::openscience::cdk::io::MDLRXNReader::read(), org::openscience::cdk::io::MDLV3000Reader::readAtomBlock(), org::openscience::cdk::io::MDLV3000Reader::readBondBlock(), org::openscience::cdk::io::ZMatrixReader::readChemFile(), org::openscience::cdk::io::XYZReader::readChemFile(), org::openscience::cdk::io::ShelXReader::readChemFile(), org::openscience::cdk::io::PMPReader::readChemFile(), org::openscience::cdk::io::PDBReader::readChemFile(), org::openscience::cdk::io::MDLV2000Reader::readChemFile(), org::openscience::cdk::io::MDLReader::readChemFile(), org::openscience::cdk::io::HINReader::readChemFile(), org::openscience::cdk::io::Gaussian98Reader::readChemFile(), org::openscience::cdk::io::GamessReader::readChemFile(), org::openscience::cdk::io::CIFReader::readChemFile(), org::openscience::cdk::io::Gaussian03Reader::readCoordinates(), org::openscience::cdk::io::MDLV2000Reader::readMolecule(), org::openscience::cdk::io::MDLReader::readMolecule(), org::openscience::cdk::io::MDLV3000Reader::readSGroup(), org::openscience::cdk::smiles::DeduceBondSystemTool::recoverRingSystem(), org::openscience::cdk::applications::undoredo::AddHydrogenEdit::redoExplicitHydrogenAdding(), org::openscience::cdk::tools::manipulator::AtomContainerManipulator::removeHydrogens(), org::openscience::cdk::tools::manipulator::ReactionManipulator::reverse(), org::openscience::cdk::tools::SaturationChecker::saturate(), org::openscience::cdk::tools::ValencyHybridChecker::saturateByIncreasingBondOrder(), org::openscience::cdk::tools::SmilesValencyChecker::saturateByIncreasingBondOrder(), org::openscience::cdk::controller::AbstractController2D::selectNearestChemObjectIfNoneSelected(), org::openscience::cdk::applications::jchempaint::JChemPaintPanel::setJChemPaintModel(), org::openscience::cdk::layout::StructureDiagramGenerator::setMolecule(), org::openscience::cdk::layout::StructureDiagramGenerator::StructureDiagramGenerator(), org::openscience::cdk::io::PDBWriter::write(), and org::openscience::cdk::io::MDLWriter::writeMolecule().


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