Here is a list of all documented class members with links to the class documentation for each member:

- i -

• identifier : org::openscience::cdk::AtomType , org::openscience::cdk::ChemObject
• identifyAtomicSymbol() : org::openscience::cdk::io::GamessReader
• identifyBonds() : org::openscience::cdk::graph::SpanningTree
• identity() : org::openscience::cdk::graph::invariant::GIMatrix
• imag : org::openscience::cdk::math::Complex
• image : org::openscience::cdk::iupac::parser::Token
• imageSuffix : org::openscience::cdk::applications::jchempaint::action::JCPAction
• imagmatrix : org::openscience::cdk::math::IMatrix
• IMatrix() : org::openscience::cdk::math::IMatrix
• inchi : org::openscience::cdk::applications::jchempaint::io::JCPFileFilter
• INCHI : org::openscience::cdk::CDKConstants
• InChIGenerator() : org::openscience::cdk::inchi::InChIGenerator
• InChIGeneratorFactory() : org::openscience::cdk::inchi::InChIGeneratorFactory
• INChIHandler() : org::openscience::cdk::io::inchi::INChIHandler
• INChIPlainTextReader() : org::openscience::cdk::io::INChIPlainTextReader
• INChIReader() : org::openscience::cdk::io::INChIReader
• InChIToStructure() : org::openscience::cdk::inchi::InChIToStructure
• index : org::openscience::cdk::tools::FormatStringBuffer
• InductiveAtomicHardnessDescriptor() : org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicHardnessDescriptor
• InductiveAtomicSoftnessDescriptor() : org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicSoftnessDescriptor
• InductivePartialCharges() : org::openscience::cdk::charges::InductivePartialCharges
• info() : org::openscience::cdk::tools::LoggingTool
• InfoDialog() : org::openscience::cdk::applications::jchempaint::dialogs::InfoDialog
• init() : org::openscience::cdk::io::INChIPlainTextReader , org::openscience::cdk::io::INChIReader
• initialize() : org::openscience::cdk::modeling::builder3d::MMFF94ParametersCall , org::openscience::cdk::modeling::forcefield::ConjugateGradientMethod
• initializeGrid() : org::openscience::cdk::tools::GridGenerator
• initializeHydrogenPairCheck() : org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor
• initializeMatrix() : org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator
• initializeParameters() : org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator
• initiate() : org::openscience::cdk::reaction::type::RearrangementCation1Reaction , org::openscience::cdk::reaction::type::RearrangementCation2Reaction , org::openscience::cdk::reaction::type::RearrangementCation3Reaction , org::openscience::cdk::reaction::type::RearrangementRadical1Reaction , org::openscience::cdk::reaction::type::RearrangementRadical2Reaction , org::openscience::cdk::reaction::type::RearrangementRadical3Reaction , org::openscience::cdk::reaction::IReactionProcess , org::openscience::cdk::reaction::type::BreakingBondReaction , org::openscience::cdk::reaction::type::CarbonylEliminationReaction , org::openscience::cdk::reaction::type::CleavageBondMultiReaction , org::openscience::cdk::reaction::type::CleavageBondReaction , org::openscience::cdk::reaction::type::DisplacementChargeFromAcceptorReaction , org::openscience::cdk::reaction::type::DisplacementChargeFromDonorReaction , org::openscience::cdk::reaction::type::ElectronImpactNBEReaction , org::openscience::cdk::reaction::type::ElectronImpactPDBReaction , org::openscience::cdk::reaction::type::HydrogenRearrangementDeltaReaction , org::openscience::cdk::reaction::type::HydrogenRearrangementGammaReaction , org::openscience::cdk::reaction::type::HyperconjugationReaction , org::openscience::cdk::reaction::type::RadicalSiteInitiationHReaction , org::openscience::cdk::reaction::type::RadicalSiteInitiationReaction , org::openscience::cdk::reaction::type::RearrangementAnion1Reaction , org::openscience::cdk::reaction::type::RearrangementAnion2Reaction , org::openscience::cdk::reaction::type::RearrangementAnion3Reaction
• initilize() : org::openscience::cdk::modeling::builder3d::AtomPlacer3D
• initilizeBitSets() : org::openscience::cdk::isomorphism::matchers::smarts::RecursiveSmartsAtom
• initPath() : org::openscience::cdk::ringsearch::FiguerasSSSRFinder
• initPathGraph() : org::openscience::cdk::ringsearch::AllRingsFinder
• input : org::openscience::cdk::io::GamessReader
• interp : org::openscience::cdk::qsar::model::R::RModel
• INVARIANCE_PAIR : org::openscience::cdk::smiles::InvPair
• inverse() : org::openscience::cdk::graph::invariant::GIMatrix
• InverseSymbolSetQueryAtom() : org::openscience::cdk::isomorphism::matchers::InverseSymbolSetQueryAtom
• invertLine() : org::openscience::cdk::graph::invariant::GIMatrix
• IOSetting() : org::openscience::cdk::io::setting::IOSetting
• IPAtomicDescriptor() : org::openscience::cdk::qsar::descriptors::atomic::IPAtomicDescriptor
• IPBondDescriptor() : org::openscience::cdk::qsar::descriptors::bond::IPBondDescriptor
• IPMolecularDescriptor() : org::openscience::cdk::qsar::descriptors::molecular::IPMolecularDescriptor
• IS_HYDROGENBOND_ACCEPTOR : org::openscience::cdk::CDKConstants
• IS_HYDROGENBOND_DONOR : org::openscience::cdk::CDKConstants
• ISALIPHATIC : org::openscience::cdk::CDKConstants
• isAlreadyAFile : org::openscience::cdk::applications::jchempaint::JChemPaintPanel
• isANeighboorsInAnAtomContainer() : org::openscience::cdk::qsar::descriptors::atompair::PiContactDetectionDescriptor
• isAntisymmetric() : org::openscience::cdk::graph::invariant::GIMatrix
• isAromatic() : org::openscience::cdk::aromaticity::AromaticityCalculator
• ISAROMATIC : org::openscience::cdk::CDKConstants
• isBiggerOrEqual() : org::openscience::cdk::applications::APIVersionTester
• isBondBroken() : org::openscience::cdk::smiles::SmilesGenerator
• isBonded() : org::openscience::cdk::graph::rebond::RebondTool
• isCachedAtomContainer() : org::openscience::cdk::qsar::AbstractAtomicDescriptor
• isCellEditable() : org::openscience::cdk::applications::swing::ListeningTableModel
• ISCHANGEDFC : org::openscience::cdk::charges::GasteigerPEPEPartialCharges
• isCisTrans() : org::openscience::cdk::geometry::BondTools
• ISCONJUGATED : org::openscience::cdk::CDKConstants
• isConnected() : org::openscience::cdk::graph::ConnectivityChecker
• isConnectedTo() : org::openscience::cdk::Bond , org::openscience::cdk::debug::DebugBond , org::openscience::cdk::interfaces::IBond
• isContainedIn() : org::openscience::cdk::isomorphism::mcss::RGraph
• isDebugEnabled() : org::openscience::cdk::tools::LoggingTool
• isDiagonal() : org::openscience::cdk::graph::invariant::GIMatrix
• isElement() : org::openscience::cdk::config::ElementPTFactory , org::openscience::cdk::config::IsotopeFactory
• isEmbedded() : org::openscience::cdk::applications::jchempaint::JChemPaintPanel
• isEnabled() : org::openscience::cdk::applications::jchempaint::action::JCPAction
• isEndOfDoubleBond() : org::openscience::cdk::geometry::BondTools , org::openscience::cdk::smiles::SmilesGenerator
• isForceFilling() : org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator
• isHeteroRingSystem() : org::openscience::cdk::modeling::builder3d::ForceFieldConfigurator
• ISINRING : org::openscience::cdk::CDKConstants
• isInvertible() : org::openscience::cdk::graph::invariant::GIMatrix
• isInvPart() : org::openscience::cdk::graph::invariant::CanonicalLabeler
• isIsomorph() : org::openscience::cdk::isomorphism::UniversalIsomorphismTester
• isIsomorphic() : org::openscience::cdk::isomorphism::IsomorphismTester
• isLeft() : org::openscience::cdk::geometry::BondTools
• isModified() : org::openscience::cdk::applications::jchempaint::JChemPaintModel
• isMovingAllowed() : org::openscience::cdk::controller::Controller2DModel
• ISNOTINRING : org::openscience::cdk::CDKConstants
• isOdd() : org::openscience::cdk::graph::AtomContainerPermutor
• IsomorphismTester() : org::openscience::cdk::isomorphism::IsomorphismTester
• Isotope() : org::openscience::cdk::Isotope
• IsotopeFactory() : org::openscience::cdk::config::IsotopeFactory
• isotopeFactory : org::openscience::cdk::smiles::SmilesGenerator
• IsotopeGenerator() : org::openscience::cdk::tools::IsotopeGenerator
• IsotopeHandler() : org::openscience::cdk::config::isotopes::IsotopeHandler
• IsotopeReader() : org::openscience::cdk::config::isotopes::IsotopeReader
• ISOTROPIC_SHIELDING : org::openscience::cdk::CDKConstants
• isOverSaturated() : org::openscience::cdk::tools::SaturationChecker
• ISPLACED : org::openscience::cdk::CDKConstants
• isPopupAction : org::openscience::cdk::applications::jchempaint::action::JCPAction
• IsProtonInAromaticSystemDescriptor() : org::openscience::cdk::qsar::descriptors::atomic::IsProtonInAromaticSystemDescriptor
• IsProtonInConjugatedPiSystemDescriptor() : org::openscience::cdk::qsar::descriptors::atomic::IsProtonInConjugatedPiSystemDescriptor
• isRingOpening() : org::openscience::cdk::smiles::SmilesGenerator
• isSameRing() : org::openscience::cdk::tools::manipulator::RingSetManipulator
• isSaturated() : org::openscience::cdk::tools::SaturationChecker , org::openscience::cdk::tools::LonePairElectronChecker , org::openscience::cdk::tools::SaturationChecker , org::openscience::cdk::tools::SmilesValencyChecker , org::openscience::cdk::tools::ValencyChecker , org::openscience::cdk::tools::ValencyHybridChecker , org::openscience::cdk::tools::ValencyChecker , org::openscience::cdk::tools::SmilesValencyChecker
• isSmaller() : org::openscience::cdk::applications::APIVersionTester
• isSquare() : org::openscience::cdk::graph::invariant::GIMatrix
• isSquarePlanar() : org::openscience::cdk::geometry::BondTools
• isStartOfDoubleBond() : org::openscience::cdk::geometry::BondTools , org::openscience::cdk::smiles::SmilesGenerator
• isStereo() : org::openscience::cdk::geometry::BondTools
• isSubgraph() : org::openscience::cdk::isomorphism::UniversalIsomorphismTester
• isSubset() : org::openscience::cdk::fingerprint::FingerprinterTool
• isSymmetric() : org::openscience::cdk::graph::invariant::GIMatrix
• isTetrahedral() : org::openscience::cdk::geometry::BondTools
• isTraversable() : org::openscience::cdk::applications::jchempaint::io::JCPFileView
• isTriangularInferior() : org::openscience::cdk::graph::invariant::GIMatrix
• isTriangularSuperior() : org::openscience::cdk::graph::invariant::GIMatrix
• isTrigonalBipyramidalOrOctahedral() : org::openscience::cdk::geometry::BondTools
• isUndoableChange() : org::openscience::cdk::controller::AbstractController2D
• isUnsaturated() : org::openscience::cdk::tools::SaturationChecker , org::openscience::cdk::tools::SmilesValencyChecker , org::openscience::cdk::tools::ValencyChecker , org::openscience::cdk::tools::ValencyHybridChecker
• isValid() : org::openscience::cdk::index::CASNumber
• isValidDoubleBondConfiguration() : org::openscience::cdk::geometry::BondTools , org::openscience::cdk::smiles::SmilesGenerator
• isViewerOnly() : org::openscience::cdk::applications::jchempaint::JChemPaintPanel
• isXMLBased() : org::openscience::cdk::io::formats::ABINITFormat , org::openscience::cdk::io::formats::INChIFormat , org::openscience::cdk::io::formats::MPQCFormat , org::openscience::cdk::io::formats::GROMOS96Format , org::openscience::cdk::io::formats::BGFFormat , org::openscience::cdk::io::formats::GhemicalSPMFormat , org::openscience::cdk::io::formats::MDLV2000Format , org::openscience::cdk::io::formats::PubChemFormat , org::openscience::cdk::io::formats::CACheFormat , org::openscience::cdk::io::formats::SpartanFormat , org::openscience::cdk::io::formats::UniChemXYZFormat , org::openscience::cdk::io::formats::SMILESFormat , org::openscience::cdk::io::formats::ChemDrawFormat , org::openscience::cdk::io::formats::Gaussian03Format , org::openscience::cdk::io::formats::PDBMLFormat , org::openscience::cdk::io::formats::POVRayFormat , org::openscience::cdk::io::formats::CMLRSSFormat , org::openscience::cdk::io::formats::MDLRXNFormat , org::openscience::cdk::io::formats::MOPAC93Format , org::openscience::cdk::io::formats::PCModelFormat , org::openscience::cdk::io::formats::INChIPlainTextFormat , org::openscience::cdk::io::formats::JMEFormat , org::openscience::cdk::io::formats::MACiEFormat , org::openscience::cdk::io::formats::PQSChemFormat , org::openscience::cdk::io::formats::YasaraFormat , org::openscience::cdk::io::formats::SybylDescriptorFormat , org::openscience::cdk::io::formats::MacroModelFormat , org::openscience::cdk::io::formats::MDLFormat , org::openscience::cdk::io::formats::CIFFormat , org::openscience::cdk::io::formats::PDBFormat , org::openscience::cdk::io::formats::CRK2DFormat , org::openscience::cdk::io::formats::CRK3DFormat , org::openscience::cdk::io::formats::FingerprintFormat , org::openscience::cdk::io::formats::CacaoInternalFormat , org::openscience::cdk::io::formats::TinkerXYZFormat , org::openscience::cdk::io::formats::IResourceFormat , org::openscience::cdk::io::formats::ZMatrixFormat , org::openscience::cdk::io::formats::MOPAC2002Format , org::openscience::cdk::io::formats::CDKSourceCodeFormat , org::openscience::cdk::io::formats::Chem3D_Cartesian_1Format , org::openscience::cdk::io::formats::GaussianInputFormat , org::openscience::cdk::io::formats::AlchemyFormat , org::openscience::cdk::io::formats::BSFormat , org::openscience::cdk::io::formats::DOCK5Format , org::openscience::cdk::io::formats::CacaoCartesianFormat , org::openscience::cdk::io::formats::Aces2Format , org::openscience::cdk::io::formats::TinkerMM2Format , org::openscience::cdk::io::formats::VASPFormat , org::openscience::cdk::io::formats::ZindoFormat , org::openscience::cdk::io::formats::GhemicalMMFormat , org::openscience::cdk::io::formats::NWChemFormat , org::openscience::cdk::io::formats::Gaussian95Format , org::openscience::cdk::io::formats::Gaussian90Format , org::openscience::cdk::io::formats::GamessFormat , org::openscience::cdk::io::formats::SMARTSFormat , org::openscience::cdk::io::formats::ViewmolFormat , org::openscience::cdk::io::formats::CTXFormat , org::openscience::cdk::io::formats::ShelXFormat , org::openscience::cdk::io::formats::PMPFormat , org::openscience::cdk::io::formats::CMLFormat , org::openscience::cdk::io::formats::MOPAC97Format , org::openscience::cdk::io::formats::TurboMoleFormat , org::openscience::cdk::io::formats::CrystClustFormat , org::openscience::cdk::io::formats::ChemtoolFormat , org::openscience::cdk::io::formats::Gaussian92Format , org::openscience::cdk::io::formats::Chem3D_Cartesian_2Format , org::openscience::cdk::io::formats::XEDFormat , org::openscience::cdk::io::formats::MMODFormat , org::openscience::cdk::io::formats::HINFormat , org::openscience::cdk::io::formats::QChemFormat , org::openscience::cdk::io::formats::Gaussian98Format , org::openscience::cdk::io::formats::SDFFormat , org::openscience::cdk::io::formats::FenskeHall_ZMatrixFormat , org::openscience::cdk::io::formats::PubChemASNFormat , org::openscience::cdk::io::formats::JaguarFormat , org::openscience::cdk::io::formats::SVGFormat , org::openscience::cdk::io::formats::DaltonFormat , org::openscience::cdk::io::formats::DMol3Format , org::openscience::cdk::io::formats::Mol2Format , org::openscience::cdk::io::formats::MOPAC7Format , org::openscience::cdk::io::formats::MDLRXNV3000Format , org::openscience::cdk::io::formats::ADFFormat , org::openscience::cdk::io::formats::MDLV3000Format , org::openscience::cdk::io::formats::RawCopyFormat , org::openscience::cdk::io::formats::SMILESFIXFormat , org::openscience::cdk::io::formats::Gaussian94Format , org::openscience::cdk::io::formats::XYZFormat
• IteratingMDLReader() : org::openscience::cdk::io::iterator::IteratingMDLReader
• IteratingSMILESReader() : org::openscience::cdk::io::iterator::IteratingSMILESReader