Here is a list of all documented class members with links to the class documentation for each member:
- identifier
: org::openscience::cdk::AtomType
, org::openscience::cdk::ChemObject
- identifyAtomicSymbol()
: org::openscience::cdk::io::GamessReader
- identifyBonds()
: org::openscience::cdk::graph::SpanningTree
- identity()
: org::openscience::cdk::graph::invariant::GIMatrix
- imag
: org::openscience::cdk::math::Complex
- image
: org::openscience::cdk::iupac::parser::Token
- imageSuffix
: org::openscience::cdk::applications::jchempaint::action::JCPAction
- imagmatrix
: org::openscience::cdk::math::IMatrix
- IMatrix()
: org::openscience::cdk::math::IMatrix
- inchi
: org::openscience::cdk::applications::jchempaint::io::JCPFileFilter
- INCHI
: org::openscience::cdk::CDKConstants
- InChIGenerator()
: org::openscience::cdk::inchi::InChIGenerator
- InChIGeneratorFactory()
: org::openscience::cdk::inchi::InChIGeneratorFactory
- INChIHandler()
: org::openscience::cdk::io::inchi::INChIHandler
- INChIPlainTextReader()
: org::openscience::cdk::io::INChIPlainTextReader
- INChIReader()
: org::openscience::cdk::io::INChIReader
- InChIToStructure()
: org::openscience::cdk::inchi::InChIToStructure
- index
: org::openscience::cdk::tools::FormatStringBuffer
- InductiveAtomicHardnessDescriptor()
: org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicHardnessDescriptor
- InductiveAtomicSoftnessDescriptor()
: org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicSoftnessDescriptor
- InductivePartialCharges()
: org::openscience::cdk::charges::InductivePartialCharges
- info()
: org::openscience::cdk::tools::LoggingTool
- InfoDialog()
: org::openscience::cdk::applications::jchempaint::dialogs::InfoDialog
- init()
: org::openscience::cdk::io::INChIPlainTextReader
, org::openscience::cdk::io::INChIReader
- initialize()
: org::openscience::cdk::modeling::builder3d::MMFF94ParametersCall
, org::openscience::cdk::modeling::forcefield::ConjugateGradientMethod
- initializeGrid()
: org::openscience::cdk::tools::GridGenerator
- initializeHydrogenPairCheck()
: org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor
- initializeMatrix()
: org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator
- initializeParameters()
: org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator
- initiate()
: org::openscience::cdk::reaction::type::RearrangementCation1Reaction
, org::openscience::cdk::reaction::type::RearrangementCation2Reaction
, org::openscience::cdk::reaction::type::RearrangementCation3Reaction
, org::openscience::cdk::reaction::type::RearrangementRadical1Reaction
, org::openscience::cdk::reaction::type::RearrangementRadical2Reaction
, org::openscience::cdk::reaction::type::RearrangementRadical3Reaction
, org::openscience::cdk::reaction::IReactionProcess
, org::openscience::cdk::reaction::type::BreakingBondReaction
, org::openscience::cdk::reaction::type::CarbonylEliminationReaction
, org::openscience::cdk::reaction::type::CleavageBondMultiReaction
, org::openscience::cdk::reaction::type::CleavageBondReaction
, org::openscience::cdk::reaction::type::DisplacementChargeFromAcceptorReaction
, org::openscience::cdk::reaction::type::DisplacementChargeFromDonorReaction
, org::openscience::cdk::reaction::type::ElectronImpactNBEReaction
, org::openscience::cdk::reaction::type::ElectronImpactPDBReaction
, org::openscience::cdk::reaction::type::HydrogenRearrangementDeltaReaction
, org::openscience::cdk::reaction::type::HydrogenRearrangementGammaReaction
, org::openscience::cdk::reaction::type::HyperconjugationReaction
, org::openscience::cdk::reaction::type::RadicalSiteInitiationHReaction
, org::openscience::cdk::reaction::type::RadicalSiteInitiationReaction
, org::openscience::cdk::reaction::type::RearrangementAnion1Reaction
, org::openscience::cdk::reaction::type::RearrangementAnion2Reaction
, org::openscience::cdk::reaction::type::RearrangementAnion3Reaction
- initilize()
: org::openscience::cdk::modeling::builder3d::AtomPlacer3D
- initilizeBitSets()
: org::openscience::cdk::isomorphism::matchers::smarts::RecursiveSmartsAtom
- initPath()
: org::openscience::cdk::ringsearch::FiguerasSSSRFinder
- initPathGraph()
: org::openscience::cdk::ringsearch::AllRingsFinder
- input
: org::openscience::cdk::io::GamessReader
- interp
: org::openscience::cdk::qsar::model::R::RModel
- INVARIANCE_PAIR
: org::openscience::cdk::smiles::InvPair
- inverse()
: org::openscience::cdk::graph::invariant::GIMatrix
- InverseSymbolSetQueryAtom()
: org::openscience::cdk::isomorphism::matchers::InverseSymbolSetQueryAtom
- invertLine()
: org::openscience::cdk::graph::invariant::GIMatrix
- IOSetting()
: org::openscience::cdk::io::setting::IOSetting
- IPAtomicDescriptor()
: org::openscience::cdk::qsar::descriptors::atomic::IPAtomicDescriptor
- IPBondDescriptor()
: org::openscience::cdk::qsar::descriptors::bond::IPBondDescriptor
- IPMolecularDescriptor()
: org::openscience::cdk::qsar::descriptors::molecular::IPMolecularDescriptor
- IS_HYDROGENBOND_ACCEPTOR
: org::openscience::cdk::CDKConstants
- IS_HYDROGENBOND_DONOR
: org::openscience::cdk::CDKConstants
- ISALIPHATIC
: org::openscience::cdk::CDKConstants
- isAlreadyAFile
: org::openscience::cdk::applications::jchempaint::JChemPaintPanel
- isANeighboorsInAnAtomContainer()
: org::openscience::cdk::qsar::descriptors::atompair::PiContactDetectionDescriptor
- isAntisymmetric()
: org::openscience::cdk::graph::invariant::GIMatrix
- isAromatic()
: org::openscience::cdk::aromaticity::AromaticityCalculator
- ISAROMATIC
: org::openscience::cdk::CDKConstants
- isBiggerOrEqual()
: org::openscience::cdk::applications::APIVersionTester
- isBondBroken()
: org::openscience::cdk::smiles::SmilesGenerator
- isBonded()
: org::openscience::cdk::graph::rebond::RebondTool
- isCachedAtomContainer()
: org::openscience::cdk::qsar::AbstractAtomicDescriptor
- isCellEditable()
: org::openscience::cdk::applications::swing::ListeningTableModel
- ISCHANGEDFC
: org::openscience::cdk::charges::GasteigerPEPEPartialCharges
- isCisTrans()
: org::openscience::cdk::geometry::BondTools
- ISCONJUGATED
: org::openscience::cdk::CDKConstants
- isConnected()
: org::openscience::cdk::graph::ConnectivityChecker
- isConnectedTo()
: org::openscience::cdk::Bond
, org::openscience::cdk::debug::DebugBond
, org::openscience::cdk::interfaces::IBond
- isContainedIn()
: org::openscience::cdk::isomorphism::mcss::RGraph
- isDebugEnabled()
: org::openscience::cdk::tools::LoggingTool
- isDiagonal()
: org::openscience::cdk::graph::invariant::GIMatrix
- isElement()
: org::openscience::cdk::config::ElementPTFactory
, org::openscience::cdk::config::IsotopeFactory
- isEmbedded()
: org::openscience::cdk::applications::jchempaint::JChemPaintPanel
- isEnabled()
: org::openscience::cdk::applications::jchempaint::action::JCPAction
- isEndOfDoubleBond()
: org::openscience::cdk::geometry::BondTools
, org::openscience::cdk::smiles::SmilesGenerator
- isForceFilling()
: org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator
- isHeteroRingSystem()
: org::openscience::cdk::modeling::builder3d::ForceFieldConfigurator
- ISINRING
: org::openscience::cdk::CDKConstants
- isInvertible()
: org::openscience::cdk::graph::invariant::GIMatrix
- isInvPart()
: org::openscience::cdk::graph::invariant::CanonicalLabeler
- isIsomorph()
: org::openscience::cdk::isomorphism::UniversalIsomorphismTester
- isIsomorphic()
: org::openscience::cdk::isomorphism::IsomorphismTester
- isLeft()
: org::openscience::cdk::geometry::BondTools
- isModified()
: org::openscience::cdk::applications::jchempaint::JChemPaintModel
- isMovingAllowed()
: org::openscience::cdk::controller::Controller2DModel
- ISNOTINRING
: org::openscience::cdk::CDKConstants
- isOdd()
: org::openscience::cdk::graph::AtomContainerPermutor
- IsomorphismTester()
: org::openscience::cdk::isomorphism::IsomorphismTester
- Isotope()
: org::openscience::cdk::Isotope
- IsotopeFactory()
: org::openscience::cdk::config::IsotopeFactory
- isotopeFactory
: org::openscience::cdk::smiles::SmilesGenerator
- IsotopeGenerator()
: org::openscience::cdk::tools::IsotopeGenerator
- IsotopeHandler()
: org::openscience::cdk::config::isotopes::IsotopeHandler
- IsotopeReader()
: org::openscience::cdk::config::isotopes::IsotopeReader
- ISOTROPIC_SHIELDING
: org::openscience::cdk::CDKConstants
- isOverSaturated()
: org::openscience::cdk::tools::SaturationChecker
- ISPLACED
: org::openscience::cdk::CDKConstants
- isPopupAction
: org::openscience::cdk::applications::jchempaint::action::JCPAction
- IsProtonInAromaticSystemDescriptor()
: org::openscience::cdk::qsar::descriptors::atomic::IsProtonInAromaticSystemDescriptor
- IsProtonInConjugatedPiSystemDescriptor()
: org::openscience::cdk::qsar::descriptors::atomic::IsProtonInConjugatedPiSystemDescriptor
- isRingOpening()
: org::openscience::cdk::smiles::SmilesGenerator
- isSameRing()
: org::openscience::cdk::tools::manipulator::RingSetManipulator
- isSaturated()
: org::openscience::cdk::tools::SaturationChecker
, org::openscience::cdk::tools::LonePairElectronChecker
, org::openscience::cdk::tools::SaturationChecker
, org::openscience::cdk::tools::SmilesValencyChecker
, org::openscience::cdk::tools::ValencyChecker
, org::openscience::cdk::tools::ValencyHybridChecker
, org::openscience::cdk::tools::ValencyChecker
, org::openscience::cdk::tools::SmilesValencyChecker
- isSmaller()
: org::openscience::cdk::applications::APIVersionTester
- isSquare()
: org::openscience::cdk::graph::invariant::GIMatrix
- isSquarePlanar()
: org::openscience::cdk::geometry::BondTools
- isStartOfDoubleBond()
: org::openscience::cdk::geometry::BondTools
, org::openscience::cdk::smiles::SmilesGenerator
- isStereo()
: org::openscience::cdk::geometry::BondTools
- isSubgraph()
: org::openscience::cdk::isomorphism::UniversalIsomorphismTester
- isSubset()
: org::openscience::cdk::fingerprint::FingerprinterTool
- isSymmetric()
: org::openscience::cdk::graph::invariant::GIMatrix
- isTetrahedral()
: org::openscience::cdk::geometry::BondTools
- isTraversable()
: org::openscience::cdk::applications::jchempaint::io::JCPFileView
- isTriangularInferior()
: org::openscience::cdk::graph::invariant::GIMatrix
- isTriangularSuperior()
: org::openscience::cdk::graph::invariant::GIMatrix
- isTrigonalBipyramidalOrOctahedral()
: org::openscience::cdk::geometry::BondTools
- isUndoableChange()
: org::openscience::cdk::controller::AbstractController2D
- isUnsaturated()
: org::openscience::cdk::tools::SaturationChecker
, org::openscience::cdk::tools::SmilesValencyChecker
, org::openscience::cdk::tools::ValencyChecker
, org::openscience::cdk::tools::ValencyHybridChecker
- isValid()
: org::openscience::cdk::index::CASNumber
- isValidDoubleBondConfiguration()
: org::openscience::cdk::geometry::BondTools
, org::openscience::cdk::smiles::SmilesGenerator
- isViewerOnly()
: org::openscience::cdk::applications::jchempaint::JChemPaintPanel
- isXMLBased()
: org::openscience::cdk::io::formats::ABINITFormat
, org::openscience::cdk::io::formats::INChIFormat
, org::openscience::cdk::io::formats::MPQCFormat
, org::openscience::cdk::io::formats::GROMOS96Format
, org::openscience::cdk::io::formats::BGFFormat
, org::openscience::cdk::io::formats::GhemicalSPMFormat
, org::openscience::cdk::io::formats::MDLV2000Format
, org::openscience::cdk::io::formats::PubChemFormat
, org::openscience::cdk::io::formats::CACheFormat
, org::openscience::cdk::io::formats::SpartanFormat
, org::openscience::cdk::io::formats::UniChemXYZFormat
, org::openscience::cdk::io::formats::SMILESFormat
, org::openscience::cdk::io::formats::ChemDrawFormat
, org::openscience::cdk::io::formats::Gaussian03Format
, org::openscience::cdk::io::formats::PDBMLFormat
, org::openscience::cdk::io::formats::POVRayFormat
, org::openscience::cdk::io::formats::CMLRSSFormat
, org::openscience::cdk::io::formats::MDLRXNFormat
, org::openscience::cdk::io::formats::MOPAC93Format
, org::openscience::cdk::io::formats::PCModelFormat
, org::openscience::cdk::io::formats::INChIPlainTextFormat
, org::openscience::cdk::io::formats::JMEFormat
, org::openscience::cdk::io::formats::MACiEFormat
, org::openscience::cdk::io::formats::PQSChemFormat
, org::openscience::cdk::io::formats::YasaraFormat
, org::openscience::cdk::io::formats::SybylDescriptorFormat
, org::openscience::cdk::io::formats::MacroModelFormat
, org::openscience::cdk::io::formats::MDLFormat
, org::openscience::cdk::io::formats::CIFFormat
, org::openscience::cdk::io::formats::PDBFormat
, org::openscience::cdk::io::formats::CRK2DFormat
, org::openscience::cdk::io::formats::CRK3DFormat
, org::openscience::cdk::io::formats::FingerprintFormat
, org::openscience::cdk::io::formats::CacaoInternalFormat
, org::openscience::cdk::io::formats::TinkerXYZFormat
, org::openscience::cdk::io::formats::IResourceFormat
, org::openscience::cdk::io::formats::ZMatrixFormat
, org::openscience::cdk::io::formats::MOPAC2002Format
, org::openscience::cdk::io::formats::CDKSourceCodeFormat
, org::openscience::cdk::io::formats::Chem3D_Cartesian_1Format
, org::openscience::cdk::io::formats::GaussianInputFormat
, org::openscience::cdk::io::formats::AlchemyFormat
, org::openscience::cdk::io::formats::BSFormat
, org::openscience::cdk::io::formats::DOCK5Format
, org::openscience::cdk::io::formats::CacaoCartesianFormat
, org::openscience::cdk::io::formats::Aces2Format
, org::openscience::cdk::io::formats::TinkerMM2Format
, org::openscience::cdk::io::formats::VASPFormat
, org::openscience::cdk::io::formats::ZindoFormat
, org::openscience::cdk::io::formats::GhemicalMMFormat
, org::openscience::cdk::io::formats::NWChemFormat
, org::openscience::cdk::io::formats::Gaussian95Format
, org::openscience::cdk::io::formats::Gaussian90Format
, org::openscience::cdk::io::formats::GamessFormat
, org::openscience::cdk::io::formats::SMARTSFormat
, org::openscience::cdk::io::formats::ViewmolFormat
, org::openscience::cdk::io::formats::CTXFormat
, org::openscience::cdk::io::formats::ShelXFormat
, org::openscience::cdk::io::formats::PMPFormat
, org::openscience::cdk::io::formats::CMLFormat
, org::openscience::cdk::io::formats::MOPAC97Format
, org::openscience::cdk::io::formats::TurboMoleFormat
, org::openscience::cdk::io::formats::CrystClustFormat
, org::openscience::cdk::io::formats::ChemtoolFormat
, org::openscience::cdk::io::formats::Gaussian92Format
, org::openscience::cdk::io::formats::Chem3D_Cartesian_2Format
, org::openscience::cdk::io::formats::XEDFormat
, org::openscience::cdk::io::formats::MMODFormat
, org::openscience::cdk::io::formats::HINFormat
, org::openscience::cdk::io::formats::QChemFormat
, org::openscience::cdk::io::formats::Gaussian98Format
, org::openscience::cdk::io::formats::SDFFormat
, org::openscience::cdk::io::formats::FenskeHall_ZMatrixFormat
, org::openscience::cdk::io::formats::PubChemASNFormat
, org::openscience::cdk::io::formats::JaguarFormat
, org::openscience::cdk::io::formats::SVGFormat
, org::openscience::cdk::io::formats::DaltonFormat
, org::openscience::cdk::io::formats::DMol3Format
, org::openscience::cdk::io::formats::Mol2Format
, org::openscience::cdk::io::formats::MOPAC7Format
, org::openscience::cdk::io::formats::MDLRXNV3000Format
, org::openscience::cdk::io::formats::ADFFormat
, org::openscience::cdk::io::formats::MDLV3000Format
, org::openscience::cdk::io::formats::RawCopyFormat
, org::openscience::cdk::io::formats::SMILESFIXFormat
, org::openscience::cdk::io::formats::Gaussian94Format
, org::openscience::cdk::io::formats::XYZFormat
- IteratingMDLReader()
: org::openscience::cdk::io::iterator::IteratingMDLReader
- IteratingSMILESReader()
: org::openscience::cdk::io::iterator::IteratingSMILESReader