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org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom Member List

This is the complete list of members for org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom, including all inherited members.

addListener(IChemObjectListener col)org::openscience::cdk::ChemObject [inline]
atom (defined in org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom)org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [private]
Atom()org::openscience::cdk::Atom [inline]
Atom(String elementSymbol)org::openscience::cdk::Atom [inline]
Atom(String elementSymbol, javax.vecmath.Point3d point3d)org::openscience::cdk::Atom [inline]
Atom(String elementSymbol, javax.vecmath.Point2d point2d)org::openscience::cdk::Atom [inline]
Atom(IElement element)org::openscience::cdk::Atom [inline]
atomicNumberorg::openscience::cdk::Element [protected]
AtomType(String elementSymbol)org::openscience::cdk::AtomType [inline]
AtomType(String identifier, String elementSymbol)org::openscience::cdk::AtomType [inline]
AtomType(IElement element)org::openscience::cdk::AtomType [inline]
bondOrderSumorg::openscience::cdk::AtomType [package]
chargeorg::openscience::cdk::Atom [protected]
ChemObject()org::openscience::cdk::ChemObject [inline]
ChemObject(IChemObject chemObject)org::openscience::cdk::ChemObject [inline]
clone()org::openscience::cdk::PseudoAtom [inline]
compare(Object object)org::openscience::cdk::Atom [inline]
covalentRadiusorg::openscience::cdk::AtomType [package]
Default (defined in org::openscience::cdk::isomorphism::matchers::IQueryAtom)org::openscience::cdk::isomorphism::matchers::IQueryAtom [static]
electronValencyorg::openscience::cdk::AtomType [protected]
Element()org::openscience::cdk::Element [inline]
Element(IElement element)org::openscience::cdk::Element [inline]
Element(String symbol)org::openscience::cdk::Element [inline]
Element(String symbol, int atomicNumber)org::openscience::cdk::Element [inline]
exactMassorg::openscience::cdk::Isotope
formalChargeorg::openscience::cdk::AtomType [protected]
formalNeighbourCountorg::openscience::cdk::AtomType [protected]
fractionalPoint3dorg::openscience::cdk::Atom [protected]
getAtom() (defined in org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom)org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [inline]
getAtomicNumber()org::openscience::cdk::Element [inline]
getAtomTypeName()org::openscience::cdk::AtomType [inline]
getBondOrderSum()org::openscience::cdk::AtomType [inline]
getBuilder()org::openscience::cdk::ChemObject [inline]
getCharge()org::openscience::cdk::Atom [inline]
getCovalentRadius()org::openscience::cdk::AtomType [inline]
getExactMass()org::openscience::cdk::Isotope [inline]
getFlag(int flag_type)org::openscience::cdk::ChemObject [inline]
getFlags()org::openscience::cdk::ChemObject [inline]
getFormalCharge()org::openscience::cdk::AtomType [inline]
getFormalNeighbourCount()org::openscience::cdk::AtomType [inline]
getFractionalPoint3d()org::openscience::cdk::Atom [inline]
getHybridization()org::openscience::cdk::AtomType [inline]
getHydrogenCount()org::openscience::cdk::Atom [inline]
getID()org::openscience::cdk::ChemObject [inline]
getLabel()org::openscience::cdk::PseudoAtom [inline]
getListenerCount()org::openscience::cdk::ChemObject [inline]
getMassNumber()org::openscience::cdk::Isotope [inline]
getMaxBondOrder()org::openscience::cdk::AtomType [inline]
getNaturalAbundance()org::openscience::cdk::Isotope [inline]
getNotification()org::openscience::cdk::ChemObject [inline]
getPoint2d()org::openscience::cdk::Atom [inline]
getPoint3d()org::openscience::cdk::Atom [inline]
getProperties()org::openscience::cdk::ChemObject [inline]
getProperty(Object description)org::openscience::cdk::ChemObject [inline]
getRingBond() (defined in org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom)org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [inline]
getStereoParity()org::openscience::cdk::Atom [inline]
getSymbol()org::openscience::cdk::Element [inline]
getValency()org::openscience::cdk::AtomType [inline]
getVanderwaalsRadius()org::openscience::cdk::AtomType [inline]
hybridizationorg::openscience::cdk::AtomType [protected]
hydrogenCountorg::openscience::cdk::Atom [protected]
ID (defined in org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom)org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom
Isotope(String elementSymbol)org::openscience::cdk::Isotope [inline]
Isotope(int atomicNumber, String elementSymbol, int massNumber, double exactMass, double abundance)org::openscience::cdk::Isotope [inline]
Isotope(int atomicNumber, String elementSymbol, double exactMass, double abundance)org::openscience::cdk::Isotope [inline]
Isotope(String elementSymbol, int massNumber)org::openscience::cdk::Isotope [inline]
Isotope(IElement element)org::openscience::cdk::Isotope [inline]
matches(IAtom atom)org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [inline]
maxBondOrderorg::openscience::cdk::AtomType [package]
naturalAbundanceorg::openscience::cdk::Isotope
notifyChanged()org::openscience::cdk::ChemObject [inline]
notifyChanged(IChemObjectChangeEvent evt)org::openscience::cdk::ChemObject [inline]
point2dorg::openscience::cdk::Atom [protected]
point3dorg::openscience::cdk::Atom [protected]
PseudoAtom()org::openscience::cdk::PseudoAtom [inline]
PseudoAtom(String label)org::openscience::cdk::PseudoAtom [inline]
PseudoAtom(IElement element)org::openscience::cdk::PseudoAtom [inline]
PseudoAtom(String label, javax.vecmath.Point3d point3d)org::openscience::cdk::PseudoAtom [inline]
PseudoAtom(String label, javax.vecmath.Point2d point2d)org::openscience::cdk::PseudoAtom [inline]
removeListener(IChemObjectListener col)org::openscience::cdk::ChemObject [inline]
removeProperty(Object description)org::openscience::cdk::ChemObject [inline]
ringBond (defined in org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom)org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [private]
serialVersionUIDorg::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [private, static]
setAtom(IQueryAtom atom) (defined in org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom)org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [inline]
setAtomicNumber(int atomicNumber)org::openscience::cdk::Element [inline]
setAtomTypeName(String identifier)org::openscience::cdk::AtomType [inline]
setBondOrderSum(double bondOrderSum)org::openscience::cdk::AtomType [inline]
setCharge(double charge)org::openscience::cdk::PseudoAtom [inline]
setCovalentRadius(double radius)org::openscience::cdk::AtomType [inline]
setExactMass(double mass)org::openscience::cdk::PseudoAtom [inline]
setFlag(int flag_type, boolean flag_value)org::openscience::cdk::ChemObject [inline]
setFlags(boolean[] flagsNew)org::openscience::cdk::ChemObject [inline]
setFormalCharge(int charge)org::openscience::cdk::PseudoAtom [inline]
setFormalNeighbourCount(int count)org::openscience::cdk::AtomType [inline]
setFractionalPoint3d(javax.vecmath.Point3d point3d)org::openscience::cdk::Atom [inline]
org::openscience::cdk::interfaces::IAtom::setFractionalPoint3d(Point3d point3d)org::openscience::cdk::interfaces::IAtom
setHybridization(int hybridization)org::openscience::cdk::AtomType [inline]
setHydrogenCount(int hydrogenCount)org::openscience::cdk::PseudoAtom [inline]
setID(String identifier)org::openscience::cdk::ChemObject [inline]
setLabel(String label)org::openscience::cdk::PseudoAtom [inline]
setMassNumber(int massNumber)org::openscience::cdk::Isotope [inline]
setMaxBondOrder(double maxBondOrder)org::openscience::cdk::AtomType [inline]
setNaturalAbundance(double naturalAbundance)org::openscience::cdk::Isotope [inline]
setNotification(boolean bool)org::openscience::cdk::ChemObject [inline]
setOperator(String str) (defined in org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom)org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom [inline]
setPoint2d(javax.vecmath.Point2d point2d)org::openscience::cdk::Atom [inline]
org::openscience::cdk::interfaces::IAtom::setPoint2d(Point2d point2d)org::openscience::cdk::interfaces::IAtom
setPoint3d(javax.vecmath.Point3d point3d)org::openscience::cdk::Atom [inline]
org::openscience::cdk::interfaces::IAtom::setPoint3d(Point3d point3d)org::openscience::cdk::interfaces::IAtom
setProperties(Hashtable properties)org::openscience::cdk::ChemObject [inline]
setProperty(Object description, Object property)org::openscience::cdk::ChemObject [inline]
setRingBond(IQueryBond bond) (defined in org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom)org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom [inline]
setStereoParity(int stereoParity)org::openscience::cdk::PseudoAtom [inline]
setSymbol(String symbol)org::openscience::cdk::Element [inline]
setValency(int valency)org::openscience::cdk::AtomType [inline]
setVanderwaalsRadius(double radius)org::openscience::cdk::AtomType [inline]
shallowCopy()org::openscience::cdk::ChemObject [inline]
SMARTSAtom() (defined in org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom)org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom [inline]
stereoParityorg::openscience::cdk::Atom [protected]
symbolorg::openscience::cdk::Element [protected]
toString()org::openscience::cdk::PseudoAtom [inline]
vanderwaalsRadiusorg::openscience::cdk::AtomType [package]


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