org::openscience::cdk::isomorphism::matchers::SymbolQueryAtom Class Reference
Inheritance diagram for org::openscience::cdk::isomorphism::matchers::SymbolQueryAtom:
Detailed Description
.module extraDefinition at line 31 of file SymbolQueryAtom.java.
Public Member Functions | |
| void | addListener (IChemObjectListener col) |
| Object | clone () throws CloneNotSupportedException |
| boolean | compare (Object object) |
| int | getAtomicNumber () |
| String | getAtomTypeName () |
| double | getBondOrderSum () |
| IChemObjectBuilder | getBuilder () |
| double | getCharge () |
| double | getCovalentRadius () |
| double | getExactMass () |
| boolean | getFlag (int flag_type) |
| boolean[] | getFlags () |
| int | getFormalCharge () |
| int | getFormalNeighbourCount () |
| javax.vecmath.Point3d | getFractionalPoint3d () |
| int | getHybridization () |
| int | getHydrogenCount () |
| String | getID () |
| int | getListenerCount () |
| int | getMassNumber () |
| double | getMaxBondOrder () |
| double | getNaturalAbundance () |
| boolean | getNotification () |
| javax.vecmath.Point2d | getPoint2d () |
| javax.vecmath.Point3d | getPoint3d () |
| Hashtable | getProperties () |
| Object | getProperty (Object description) |
| int | getStereoParity () |
| String | getSymbol () |
| int | getValency () |
| double | getVanderwaalsRadius () |
| boolean | matches (IAtom atom) |
| void | notifyChanged (IChemObjectChangeEvent evt) |
| void | notifyChanged () |
| void | removeListener (IChemObjectListener col) |
| void | removeProperty (Object description) |
| void | setAtomicNumber (int atomicNumber) |
| void | setAtomTypeName (String identifier) |
| void | setBondOrderSum (double bondOrderSum) |
| void | setCharge (double charge) |
| void | setCovalentRadius (double radius) |
| void | setExactMass (double exactMass) |
| void | setFlag (int flag_type, boolean flag_value) |
| void | setFlags (boolean[] flagsNew) |
| void | setFormalCharge (int charge) |
| void | setFormalNeighbourCount (int count) |
| void | setFractionalPoint3d (Point3d point3d) |
| void | setFractionalPoint3d (javax.vecmath.Point3d point3d) |
| void | setHCount (int m_HCount) |
| void | setHybridization (int hybridization) |
| void | setHydrogenCount (int hydrogenCount) |
| void | setID (String identifier) |
| void | setMassNumber (int massNumber) |
| void | setMaxBondOrder (double maxBondOrder) |
| void | setNaturalAbundance (double naturalAbundance) |
| void | setNotification (boolean bool) |
| void | setOperator (String str) |
| void | setPoint2d (Point2d point2d) |
| void | setPoint2d (javax.vecmath.Point2d point2d) |
| void | setPoint3d (Point3d point3d) |
| void | setPoint3d (javax.vecmath.Point3d point3d) |
| void | setProperties (Hashtable properties) |
| void | setProperty (Object description, Object property) |
| void | setStereoParity (int stereoParity) |
| void | setSymbol (String symbol) |
| void | setValency (int valency) |
| void | setVanderwaalsRadius (double radius) |
| Object | shallowCopy () |
| SymbolQueryAtom (IAtom atom) | |
| String | toString () |
Public Attributes | |
| double | exactMass = (double) -1 |
| double | naturalAbundance = (double) -1 |
Static Public Attributes | |
| static final int | Default = 56562 |
Protected Attributes | |
| int | atomicNumber = 0 |
| double | charge = 0.0 |
| int | electronValency |
| int | formalCharge |
| int | formalNeighbourCount |
| javax.vecmath.Point3d | fractionalPoint3d |
| int | hybridization |
| int | hydrogenCount |
| javax.vecmath.Point2d | point2d |
| javax.vecmath.Point3d | point3d |
| int | stereoParity |
| String | symbol |
Package Attributes | |
| double | bondOrderSum |
| double | covalentRadius |
| double | maxBondOrder |
| double | vanderwaalsRadius |
Private Attributes | |
| int | HCount = 0 |
| String | ID |
Static Private Attributes | |
| static final long | serialVersionUID = -5774610415273279451L |
The documentation for this class was generated from the following file:
- cdk-1.0.2/src/org/openscience/cdk/isomorphism/matchers/SymbolQueryAtom.java