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org::openscience::cdk::Molecule Member List

This is the complete list of members for org::openscience::cdk::Molecule, including all inherited members.

add(IAtomContainer atomContainer)org::openscience::cdk::AtomContainer [inline]
addAtom(IAtom atom)org::openscience::cdk::AtomContainer [inline]
addAtomParity(IAtomParity parity)org::openscience::cdk::AtomContainer [inline]
addBond(IBond bond)org::openscience::cdk::AtomContainer [inline]
addBond(int atom1, int atom2, double order, int stereo)org::openscience::cdk::AtomContainer [inline]
addBond(int atom1, int atom2, double order)org::openscience::cdk::AtomContainer [inline]
addElectronContainer(IElectronContainer electronContainer)org::openscience::cdk::AtomContainer [inline]
addListener(IChemObjectListener col)org::openscience::cdk::ChemObject [inline]
addLonePair(ILonePair lonePair)org::openscience::cdk::AtomContainer [inline]
addLonePair(int atomID)org::openscience::cdk::AtomContainer [inline]
addSingleElectron(ISingleElectron singleElectron)org::openscience::cdk::AtomContainer [inline]
addSingleElectron(int atomID)org::openscience::cdk::AtomContainer [inline]
AtomContainer()org::openscience::cdk::AtomContainer [inline]
AtomContainer(IAtomContainer container)org::openscience::cdk::AtomContainer [inline]
AtomContainer(int atomCount, int bondCount, int lpCount, int seCount)org::openscience::cdk::AtomContainer [inline]
atomCountorg::openscience::cdk::AtomContainer [protected]
atomParitiesorg::openscience::cdk::AtomContainer [protected]
atomsorg::openscience::cdk::AtomContainer [protected]
atoms()org::openscience::cdk::AtomContainer [inline]
bondCountorg::openscience::cdk::AtomContainer [protected]
bondsorg::openscience::cdk::AtomContainer [protected]
bonds()org::openscience::cdk::AtomContainer [inline]
ChemObject()org::openscience::cdk::ChemObject [inline]
ChemObject(IChemObject chemObject)org::openscience::cdk::ChemObject [inline]
clone()org::openscience::cdk::Molecule [inline]
compare(Object object)org::openscience::cdk::ChemObject [inline]
contains(IAtom atom)org::openscience::cdk::AtomContainer [inline]
contains(IBond bond)org::openscience::cdk::AtomContainer [inline]
contains(ILonePair lonePair)org::openscience::cdk::AtomContainer [inline]
contains(ISingleElectron singleElectron)org::openscience::cdk::AtomContainer [inline]
contains(IElectronContainer electronContainer)org::openscience::cdk::AtomContainer [inline]
electronContainers()org::openscience::cdk::AtomContainer [inline]
getAtom(int number)org::openscience::cdk::AtomContainer [inline]
getAtomCount()org::openscience::cdk::AtomContainer [inline]
getAtomNumber(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getAtomParity(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getBond(int number)org::openscience::cdk::AtomContainer [inline]
getBond(IAtom atom1, IAtom atom2)org::openscience::cdk::AtomContainer [inline]
getBondCount()org::openscience::cdk::AtomContainer [inline]
getBondNumber(IAtom atom1, IAtom atom2)org::openscience::cdk::AtomContainer [inline]
getBondNumber(IBond bond)org::openscience::cdk::AtomContainer [inline]
getBondOrderSum(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getBuilder()org::openscience::cdk::ChemObject [inline]
getConnectedAtomsCount(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedAtomsList(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedBondsCount(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedBondsCount(int atomNumber)org::openscience::cdk::AtomContainer [inline]
getConnectedBondsList(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedElectronContainersList(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedLonePairsCount(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedLonePairsList(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedSingleElectronsCount(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getConnectedSingleElectronsList(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getElectronContainer(int number)org::openscience::cdk::AtomContainer [inline]
getElectronContainerCount()org::openscience::cdk::AtomContainer [inline]
getFirstAtom()org::openscience::cdk::AtomContainer [inline]
getFlag(int flag_type)org::openscience::cdk::ChemObject [inline]
getFlags()org::openscience::cdk::ChemObject [inline]
getID()org::openscience::cdk::ChemObject [inline]
getLastAtom()org::openscience::cdk::AtomContainer [inline]
getListenerCount()org::openscience::cdk::ChemObject [inline]
getLonePair(int number)org::openscience::cdk::AtomContainer [inline]
getLonePairCount()org::openscience::cdk::AtomContainer [inline]
getLonePairNumber(ILonePair lonePair)org::openscience::cdk::AtomContainer [inline]
getMaximumBondOrder(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getMinimumBondOrder(IAtom atom)org::openscience::cdk::AtomContainer [inline]
getNotification()org::openscience::cdk::ChemObject [inline]
getProperties()org::openscience::cdk::ChemObject [inline]
getProperty(Object description)org::openscience::cdk::ChemObject [inline]
getSingleElectron(int number)org::openscience::cdk::AtomContainer [inline]
getSingleElectronCount()org::openscience::cdk::AtomContainer [inline]
getSingleElectronNumber(ISingleElectron singleElectron)org::openscience::cdk::AtomContainer [inline]
growArraySizeorg::openscience::cdk::AtomContainer [protected]
growAtomArray()org::openscience::cdk::AtomContainer [inline, protected]
growBondArray()org::openscience::cdk::AtomContainer [inline, protected]
growLonePairArray()org::openscience::cdk::AtomContainer [inline, protected]
growSingleElectronArray()org::openscience::cdk::AtomContainer [inline, protected]
lonePairCountorg::openscience::cdk::AtomContainer [protected]
lonePairsorg::openscience::cdk::AtomContainer [protected]
lonePairs()org::openscience::cdk::AtomContainer [inline]
Molecule()org::openscience::cdk::Molecule [inline]
Molecule(int atomCount, int bondCount, int lonePairCount, int singleElectronCount)org::openscience::cdk::Molecule [inline]
Molecule(IAtomContainer container)org::openscience::cdk::Molecule [inline]
notifyChanged()org::openscience::cdk::ChemObject [inline]
notifyChanged(IChemObjectChangeEvent evt)org::openscience::cdk::ChemObject [inline]
remove(IAtomContainer atomContainer)org::openscience::cdk::AtomContainer [inline]
removeAllBonds()org::openscience::cdk::AtomContainer [inline]
removeAllElectronContainers()org::openscience::cdk::AtomContainer [inline]
removeAllElements()org::openscience::cdk::AtomContainer [inline]
removeAtom(int position)org::openscience::cdk::AtomContainer [inline]
removeAtom(IAtom atom)org::openscience::cdk::AtomContainer [inline]
removeAtomAndConnectedElectronContainers(IAtom atom)org::openscience::cdk::AtomContainer [inline]
removeBond(int position)org::openscience::cdk::AtomContainer [inline]
removeBond(IAtom atom1, IAtom atom2)org::openscience::cdk::AtomContainer [inline]
removeBond(IBond bond)org::openscience::cdk::AtomContainer [inline]
removeElectronContainer(int number)org::openscience::cdk::AtomContainer [inline]
removeElectronContainer(IElectronContainer electronContainer)org::openscience::cdk::AtomContainer [inline]
removeListener(IChemObjectListener col)org::openscience::cdk::ChemObject [inline]
removeLonePair(int position)org::openscience::cdk::AtomContainer [inline]
removeLonePair(ILonePair lonePair)org::openscience::cdk::AtomContainer [inline]
removeProperty(Object description)org::openscience::cdk::ChemObject [inline]
removeSingleElectron(int position)org::openscience::cdk::AtomContainer [inline]
removeSingleElectron(ISingleElectron singleElectron)org::openscience::cdk::AtomContainer [inline]
serialVersionUIDorg::openscience::cdk::Molecule [private, static]
setAtom(int number, IAtom atom)org::openscience::cdk::AtomContainer [inline]
setAtoms(IAtom[] atoms)org::openscience::cdk::AtomContainer [inline]
setBonds(IBond[] bonds)org::openscience::cdk::AtomContainer [inline]
setFlag(int flag_type, boolean flag_value)org::openscience::cdk::ChemObject [inline]
setFlags(boolean[] flagsNew)org::openscience::cdk::ChemObject [inline]
setID(String identifier)org::openscience::cdk::ChemObject [inline]
setNotification(boolean bool)org::openscience::cdk::ChemObject [inline]
setProperties(Hashtable properties)org::openscience::cdk::ChemObject [inline]
setProperty(Object description, Object property)org::openscience::cdk::ChemObject [inline]
shallowCopy()org::openscience::cdk::ChemObject [inline]
singleElectronCountorg::openscience::cdk::AtomContainer [protected]
singleElectronsorg::openscience::cdk::AtomContainer [protected]
singleElectrons()org::openscience::cdk::AtomContainer [inline]
stateChanged(IChemObjectChangeEvent event)org::openscience::cdk::AtomContainer [inline]
toString()org::openscience::cdk::Molecule [inline]


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