, including all inherited members.
addListener(IChemObjectListener col) | org::openscience::cdk::ChemObject | [inline] |
Atom() | org::openscience::cdk::Atom | [inline] |
Atom(String elementSymbol) | org::openscience::cdk::Atom | [inline] |
Atom(String elementSymbol, javax.vecmath.Point3d point3d) | org::openscience::cdk::Atom | [inline] |
Atom(String elementSymbol, javax.vecmath.Point2d point2d) | org::openscience::cdk::Atom | [inline] |
Atom(IElement element) | org::openscience::cdk::Atom | [inline] |
atomicNumber | org::openscience::cdk::Element | [protected] |
AtomType(String elementSymbol) | org::openscience::cdk::AtomType | [inline] |
AtomType(String identifier, String elementSymbol) | org::openscience::cdk::AtomType | [inline] |
AtomType(IElement element) | org::openscience::cdk::AtomType | [inline] |
bondOrderSum | org::openscience::cdk::AtomType | [package] |
charge | org::openscience::cdk::Atom | [protected] |
ChemObject() | org::openscience::cdk::ChemObject | [inline] |
ChemObject(IChemObject chemObject) | org::openscience::cdk::ChemObject | [inline] |
clone() | org::openscience::cdk::PseudoAtom | [inline] |
compare(Object object) | org::openscience::cdk::Atom | [inline] |
covalentRadius | org::openscience::cdk::AtomType | [package] |
electronValency | org::openscience::cdk::AtomType | [protected] |
Element() | org::openscience::cdk::Element | [inline] |
Element(IElement element) | org::openscience::cdk::Element | [inline] |
Element(String symbol) | org::openscience::cdk::Element | [inline] |
Element(String symbol, int atomicNumber) | org::openscience::cdk::Element | [inline] |
EnzymeResidueLocator(String label) | org::openscience::cdk::EnzymeResidueLocator | [inline] |
EnzymeResidueLocator(Atom atom) | org::openscience::cdk::EnzymeResidueLocator | [inline] |
exactMass | org::openscience::cdk::Isotope | |
formalCharge | org::openscience::cdk::AtomType | [protected] |
formalNeighbourCount | org::openscience::cdk::AtomType | [protected] |
fractionalPoint3d | org::openscience::cdk::Atom | [protected] |
getAtomicNumber() | org::openscience::cdk::Element | [inline] |
getAtomTypeName() | org::openscience::cdk::AtomType | [inline] |
getBondOrderSum() | org::openscience::cdk::AtomType | [inline] |
getBuilder() | org::openscience::cdk::ChemObject | [inline] |
getCharge() | org::openscience::cdk::Atom | [inline] |
getCovalentRadius() | org::openscience::cdk::AtomType | [inline] |
getExactMass() | org::openscience::cdk::Isotope | [inline] |
getFlag(int flag_type) | org::openscience::cdk::ChemObject | [inline] |
getFlags() | org::openscience::cdk::ChemObject | [inline] |
getFormalCharge() | org::openscience::cdk::AtomType | [inline] |
getFormalNeighbourCount() | org::openscience::cdk::AtomType | [inline] |
getFractionalPoint3d() | org::openscience::cdk::Atom | [inline] |
getHybridization() | org::openscience::cdk::AtomType | [inline] |
getHydrogenCount() | org::openscience::cdk::Atom | [inline] |
getID() | org::openscience::cdk::ChemObject | [inline] |
getLabel() | org::openscience::cdk::PseudoAtom | [inline] |
getListenerCount() | org::openscience::cdk::ChemObject | [inline] |
getMassNumber() | org::openscience::cdk::Isotope | [inline] |
getMaxBondOrder() | org::openscience::cdk::AtomType | [inline] |
getNaturalAbundance() | org::openscience::cdk::Isotope | [inline] |
getNotification() | org::openscience::cdk::ChemObject | [inline] |
getPoint2d() | org::openscience::cdk::Atom | [inline] |
getPoint3d() | org::openscience::cdk::Atom | [inline] |
getProperties() | org::openscience::cdk::ChemObject | [inline] |
getProperty(Object description) | org::openscience::cdk::ChemObject | [inline] |
getStereoParity() | org::openscience::cdk::Atom | [inline] |
getSymbol() | org::openscience::cdk::Element | [inline] |
getValency() | org::openscience::cdk::AtomType | [inline] |
getVanderwaalsRadius() | org::openscience::cdk::AtomType | [inline] |
hybridization | org::openscience::cdk::AtomType | [protected] |
hydrogenCount | org::openscience::cdk::Atom | [protected] |
Isotope(String elementSymbol) | org::openscience::cdk::Isotope | [inline] |
Isotope(int atomicNumber, String elementSymbol, int massNumber, double exactMass, double abundance) | org::openscience::cdk::Isotope | [inline] |
Isotope(int atomicNumber, String elementSymbol, double exactMass, double abundance) | org::openscience::cdk::Isotope | [inline] |
Isotope(String elementSymbol, int massNumber) | org::openscience::cdk::Isotope | [inline] |
Isotope(IElement element) | org::openscience::cdk::Isotope | [inline] |
maxBondOrder | org::openscience::cdk::AtomType | [package] |
naturalAbundance | org::openscience::cdk::Isotope | |
notifyChanged() | org::openscience::cdk::ChemObject | [inline] |
notifyChanged(IChemObjectChangeEvent evt) | org::openscience::cdk::ChemObject | [inline] |
point2d | org::openscience::cdk::Atom | [protected] |
point3d | org::openscience::cdk::Atom | [protected] |
PseudoAtom() | org::openscience::cdk::PseudoAtom | [inline] |
PseudoAtom(String label) | org::openscience::cdk::PseudoAtom | [inline] |
PseudoAtom(IElement element) | org::openscience::cdk::PseudoAtom | [inline] |
PseudoAtom(String label, javax.vecmath.Point3d point3d) | org::openscience::cdk::PseudoAtom | [inline] |
PseudoAtom(String label, javax.vecmath.Point2d point2d) | org::openscience::cdk::PseudoAtom | [inline] |
removeListener(IChemObjectListener col) | org::openscience::cdk::ChemObject | [inline] |
removeProperty(Object description) | org::openscience::cdk::ChemObject | [inline] |
serialVersionUID | org::openscience::cdk::EnzymeResidueLocator | [private, static] |
setAtomicNumber(int atomicNumber) | org::openscience::cdk::Element | [inline] |
setAtomTypeName(String identifier) | org::openscience::cdk::AtomType | [inline] |
setBondOrderSum(double bondOrderSum) | org::openscience::cdk::AtomType | [inline] |
setCharge(double charge) | org::openscience::cdk::PseudoAtom | [inline] |
setCovalentRadius(double radius) | org::openscience::cdk::AtomType | [inline] |
setExactMass(double mass) | org::openscience::cdk::PseudoAtom | [inline] |
setFlag(int flag_type, boolean flag_value) | org::openscience::cdk::ChemObject | [inline] |
setFlags(boolean[] flagsNew) | org::openscience::cdk::ChemObject | [inline] |
setFormalCharge(int charge) | org::openscience::cdk::PseudoAtom | [inline] |
setFormalNeighbourCount(int count) | org::openscience::cdk::AtomType | [inline] |
setFractionalPoint3d(javax.vecmath.Point3d point3d) | org::openscience::cdk::Atom | [inline] |
org::openscience::cdk::interfaces::IAtom::setFractionalPoint3d(Point3d point3d) | org::openscience::cdk::interfaces::IAtom | |
setHybridization(int hybridization) | org::openscience::cdk::AtomType | [inline] |
setHydrogenCount(int hydrogenCount) | org::openscience::cdk::PseudoAtom | [inline] |
setID(String identifier) | org::openscience::cdk::ChemObject | [inline] |
setLabel(String label) | org::openscience::cdk::PseudoAtom | [inline] |
setMassNumber(int massNumber) | org::openscience::cdk::Isotope | [inline] |
setMaxBondOrder(double maxBondOrder) | org::openscience::cdk::AtomType | [inline] |
setNaturalAbundance(double naturalAbundance) | org::openscience::cdk::Isotope | [inline] |
setNotification(boolean bool) | org::openscience::cdk::ChemObject | [inline] |
setPoint2d(javax.vecmath.Point2d point2d) | org::openscience::cdk::Atom | [inline] |
org::openscience::cdk::interfaces::IAtom::setPoint2d(Point2d point2d) | org::openscience::cdk::interfaces::IAtom | |
setPoint3d(javax.vecmath.Point3d point3d) | org::openscience::cdk::Atom | [inline] |
org::openscience::cdk::interfaces::IAtom::setPoint3d(Point3d point3d) | org::openscience::cdk::interfaces::IAtom | |
setProperties(Hashtable properties) | org::openscience::cdk::ChemObject | [inline] |
setProperty(Object description, Object property) | org::openscience::cdk::ChemObject | [inline] |
setStereoParity(int stereoParity) | org::openscience::cdk::PseudoAtom | [inline] |
setSymbol(String symbol) | org::openscience::cdk::Element | [inline] |
setValency(int valency) | org::openscience::cdk::AtomType | [inline] |
setVanderwaalsRadius(double radius) | org::openscience::cdk::AtomType | [inline] |
shallowCopy() | org::openscience::cdk::ChemObject | [inline] |
stereoParity | org::openscience::cdk::Atom | [protected] |
symbol | org::openscience::cdk::Element | [protected] |
toString() | org::openscience::cdk::PseudoAtom | [inline] |
vanderwaalsRadius | org::openscience::cdk::AtomType | [package] |