, including all inherited members.
| addListener(IChemObjectListener col) | org::openscience::cdk::ChemObject | [inline] |
| Atom() | org::openscience::cdk::Atom | [inline] |
| Atom(String elementSymbol) | org::openscience::cdk::Atom | [inline] |
| Atom(String elementSymbol, javax.vecmath.Point3d point3d) | org::openscience::cdk::Atom | [inline] |
| Atom(String elementSymbol, javax.vecmath.Point2d point2d) | org::openscience::cdk::Atom | [inline] |
| Atom(IElement element) | org::openscience::cdk::Atom | [inline] |
| atomicNumber | org::openscience::cdk::Element | [protected] |
| AtomType(String elementSymbol) | org::openscience::cdk::AtomType | [inline] |
| AtomType(String identifier, String elementSymbol) | org::openscience::cdk::AtomType | [inline] |
| AtomType(IElement element) | org::openscience::cdk::AtomType | [inline] |
| bondOrderSum | org::openscience::cdk::AtomType | [package] |
| charge | org::openscience::cdk::Atom | [protected] |
| ChemObject() | org::openscience::cdk::ChemObject | [inline] |
| ChemObject(IChemObject chemObject) | org::openscience::cdk::ChemObject | [inline] |
| clone() | org::openscience::cdk::PseudoAtom | [inline] |
| compare(Object object) | org::openscience::cdk::Atom | [inline] |
| covalentRadius | org::openscience::cdk::AtomType | [package] |
| electronValency | org::openscience::cdk::AtomType | [protected] |
| Element() | org::openscience::cdk::Element | [inline] |
| Element(IElement element) | org::openscience::cdk::Element | [inline] |
| Element(String symbol) | org::openscience::cdk::Element | [inline] |
| Element(String symbol, int atomicNumber) | org::openscience::cdk::Element | [inline] |
| EnzymeResidueLocator(String label) | org::openscience::cdk::EnzymeResidueLocator | [inline] |
| EnzymeResidueLocator(Atom atom) | org::openscience::cdk::EnzymeResidueLocator | [inline] |
| exactMass | org::openscience::cdk::Isotope | |
| formalCharge | org::openscience::cdk::AtomType | [protected] |
| formalNeighbourCount | org::openscience::cdk::AtomType | [protected] |
| fractionalPoint3d | org::openscience::cdk::Atom | [protected] |
| getAtomicNumber() | org::openscience::cdk::Element | [inline] |
| getAtomTypeName() | org::openscience::cdk::AtomType | [inline] |
| getBondOrderSum() | org::openscience::cdk::AtomType | [inline] |
| getBuilder() | org::openscience::cdk::ChemObject | [inline] |
| getCharge() | org::openscience::cdk::Atom | [inline] |
| getCovalentRadius() | org::openscience::cdk::AtomType | [inline] |
| getExactMass() | org::openscience::cdk::Isotope | [inline] |
| getFlag(int flag_type) | org::openscience::cdk::ChemObject | [inline] |
| getFlags() | org::openscience::cdk::ChemObject | [inline] |
| getFormalCharge() | org::openscience::cdk::AtomType | [inline] |
| getFormalNeighbourCount() | org::openscience::cdk::AtomType | [inline] |
| getFractionalPoint3d() | org::openscience::cdk::Atom | [inline] |
| getHybridization() | org::openscience::cdk::AtomType | [inline] |
| getHydrogenCount() | org::openscience::cdk::Atom | [inline] |
| getID() | org::openscience::cdk::ChemObject | [inline] |
| getLabel() | org::openscience::cdk::PseudoAtom | [inline] |
| getListenerCount() | org::openscience::cdk::ChemObject | [inline] |
| getMassNumber() | org::openscience::cdk::Isotope | [inline] |
| getMaxBondOrder() | org::openscience::cdk::AtomType | [inline] |
| getNaturalAbundance() | org::openscience::cdk::Isotope | [inline] |
| getNotification() | org::openscience::cdk::ChemObject | [inline] |
| getPoint2d() | org::openscience::cdk::Atom | [inline] |
| getPoint3d() | org::openscience::cdk::Atom | [inline] |
| getProperties() | org::openscience::cdk::ChemObject | [inline] |
| getProperty(Object description) | org::openscience::cdk::ChemObject | [inline] |
| getStereoParity() | org::openscience::cdk::Atom | [inline] |
| getSymbol() | org::openscience::cdk::Element | [inline] |
| getValency() | org::openscience::cdk::AtomType | [inline] |
| getVanderwaalsRadius() | org::openscience::cdk::AtomType | [inline] |
| hybridization | org::openscience::cdk::AtomType | [protected] |
| hydrogenCount | org::openscience::cdk::Atom | [protected] |
| Isotope(String elementSymbol) | org::openscience::cdk::Isotope | [inline] |
| Isotope(int atomicNumber, String elementSymbol, int massNumber, double exactMass, double abundance) | org::openscience::cdk::Isotope | [inline] |
| Isotope(int atomicNumber, String elementSymbol, double exactMass, double abundance) | org::openscience::cdk::Isotope | [inline] |
| Isotope(String elementSymbol, int massNumber) | org::openscience::cdk::Isotope | [inline] |
| Isotope(IElement element) | org::openscience::cdk::Isotope | [inline] |
| maxBondOrder | org::openscience::cdk::AtomType | [package] |
| naturalAbundance | org::openscience::cdk::Isotope | |
| notifyChanged() | org::openscience::cdk::ChemObject | [inline] |
| notifyChanged(IChemObjectChangeEvent evt) | org::openscience::cdk::ChemObject | [inline] |
| point2d | org::openscience::cdk::Atom | [protected] |
| point3d | org::openscience::cdk::Atom | [protected] |
| PseudoAtom() | org::openscience::cdk::PseudoAtom | [inline] |
| PseudoAtom(String label) | org::openscience::cdk::PseudoAtom | [inline] |
| PseudoAtom(IElement element) | org::openscience::cdk::PseudoAtom | [inline] |
| PseudoAtom(String label, javax.vecmath.Point3d point3d) | org::openscience::cdk::PseudoAtom | [inline] |
| PseudoAtom(String label, javax.vecmath.Point2d point2d) | org::openscience::cdk::PseudoAtom | [inline] |
| removeListener(IChemObjectListener col) | org::openscience::cdk::ChemObject | [inline] |
| removeProperty(Object description) | org::openscience::cdk::ChemObject | [inline] |
| serialVersionUID | org::openscience::cdk::EnzymeResidueLocator | [private, static] |
| setAtomicNumber(int atomicNumber) | org::openscience::cdk::Element | [inline] |
| setAtomTypeName(String identifier) | org::openscience::cdk::AtomType | [inline] |
| setBondOrderSum(double bondOrderSum) | org::openscience::cdk::AtomType | [inline] |
| setCharge(double charge) | org::openscience::cdk::PseudoAtom | [inline] |
| setCovalentRadius(double radius) | org::openscience::cdk::AtomType | [inline] |
| setExactMass(double mass) | org::openscience::cdk::PseudoAtom | [inline] |
| setFlag(int flag_type, boolean flag_value) | org::openscience::cdk::ChemObject | [inline] |
| setFlags(boolean[] flagsNew) | org::openscience::cdk::ChemObject | [inline] |
| setFormalCharge(int charge) | org::openscience::cdk::PseudoAtom | [inline] |
| setFormalNeighbourCount(int count) | org::openscience::cdk::AtomType | [inline] |
| setFractionalPoint3d(javax.vecmath.Point3d point3d) | org::openscience::cdk::Atom | [inline] |
| org::openscience::cdk::interfaces::IAtom::setFractionalPoint3d(Point3d point3d) | org::openscience::cdk::interfaces::IAtom | |
| setHybridization(int hybridization) | org::openscience::cdk::AtomType | [inline] |
| setHydrogenCount(int hydrogenCount) | org::openscience::cdk::PseudoAtom | [inline] |
| setID(String identifier) | org::openscience::cdk::ChemObject | [inline] |
| setLabel(String label) | org::openscience::cdk::PseudoAtom | [inline] |
| setMassNumber(int massNumber) | org::openscience::cdk::Isotope | [inline] |
| setMaxBondOrder(double maxBondOrder) | org::openscience::cdk::AtomType | [inline] |
| setNaturalAbundance(double naturalAbundance) | org::openscience::cdk::Isotope | [inline] |
| setNotification(boolean bool) | org::openscience::cdk::ChemObject | [inline] |
| setPoint2d(javax.vecmath.Point2d point2d) | org::openscience::cdk::Atom | [inline] |
| org::openscience::cdk::interfaces::IAtom::setPoint2d(Point2d point2d) | org::openscience::cdk::interfaces::IAtom | |
| setPoint3d(javax.vecmath.Point3d point3d) | org::openscience::cdk::Atom | [inline] |
| org::openscience::cdk::interfaces::IAtom::setPoint3d(Point3d point3d) | org::openscience::cdk::interfaces::IAtom | |
| setProperties(Hashtable properties) | org::openscience::cdk::ChemObject | [inline] |
| setProperty(Object description, Object property) | org::openscience::cdk::ChemObject | [inline] |
| setStereoParity(int stereoParity) | org::openscience::cdk::PseudoAtom | [inline] |
| setSymbol(String symbol) | org::openscience::cdk::Element | [inline] |
| setValency(int valency) | org::openscience::cdk::AtomType | [inline] |
| setVanderwaalsRadius(double radius) | org::openscience::cdk::AtomType | [inline] |
| shallowCopy() | org::openscience::cdk::ChemObject | [inline] |
| stereoParity | org::openscience::cdk::Atom | [protected] |
| symbol | org::openscience::cdk::Element | [protected] |
| toString() | org::openscience::cdk::PseudoAtom | [inline] |
| vanderwaalsRadius | org::openscience::cdk::AtomType | [package] |