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Class List

Here are the classes, structs, unions and interfaces with brief descriptions:
org::openscience::cdk::io::formats::ABINITFormat
org::openscience::cdk::applications::jchempaint::action::AboutAction
org::openscience::cdk::applications::jchempaint::dialogs::AboutDialog
org::openscience::cdk::qsar::AbstractAtomicDescriptor
org::openscience::cdk::qsar::AbstractBondDescriptor
org::openscience::cdk::controller::AbstractController2D
org::openscience::cdk::renderer::AbstractRenderer2D
org::openscience::cdk::validate::AbstractValidator
org::openscience::cdk::io::formats::Aces2Format
org::openscience::cdk::applications::undoredo::AddAtomsAndBondsEdit
org::openscience::cdk::applications::undoredo::AddFuncGroupEdit
org::openscience::cdk::applications::jchempaint::action::AddHydrogenAction
org::openscience::cdk::applications::undoredo::AddHydrogenEdit
org::openscience::cdk::io::formats::ADFFormat
org::openscience::cdk::graph::matrix::AdjacencyMatrix
org::openscience::cdk::applications::jchempaint::action::AdjustBondOrdersAction
org::openscience::cdk::applications::undoredo::AdjustBondOrdersEdit
org::openscience::cdk::io::formats::AlchemyFormat
org::openscience::cdk::isomorphism::matchers::smarts::AliphaticAtom
org::openscience::cdk::isomorphism::matchers::smarts::AliphaticSymbolAtom
org::openscience::cdk::ringsearch::AllRingsFinder
org::openscience::cdk::qsar::descriptors::molecular::ALOGP
org::openscience::cdk::renderer::AlphaRenderer2D
org::openscience::cdk::AminoAcid
org::openscience::cdk::qsar::descriptors::molecular::AminoAcidCountDescriptor
org::openscience::cdk::tools::manipulator::AminoAcidManipulator
org::openscience::cdk::templates::AminoAcids
org::openscience::cdk::modeling::forcefield::AngleBending
org::openscience::cdk::math::qm::AngularMomentum
org::openscience::cdk::isomorphism::matchers::smarts::AnyAtom
org::openscience::cdk::isomorphism::matchers::smarts::AnyOrderQueryBond
org::openscience::cdk::applications::APIVersionTester
org::openscience::cdk::qsar::descriptors::molecular::APolDescriptor
org::openscience::cdk::applications::jchempaint::applet::AppletCanvas
org::openscience::cdk::isomorphism::matchers::smarts::AromaticAtom
org::openscience::cdk::qsar::descriptors::molecular::AromaticAtomsCountDescriptor
org::openscience::cdk::qsar::descriptors::molecular::AromaticBondsCountDescriptor
org::openscience::cdk::aromaticity::AromaticityCalculator
org::openscience::cdk::isomorphism::matchers::smarts::AromaticQueryBond
org::openscience::cdk::isomorphism::matchers::smarts::AromaticSymbolAtom
org::openscience::cdk::renderer::Arrow
org::openscience::cdk::renderer::ArrowRenderer2D
org::openscience::cdk::Association
org::openscience::cdk::Atom
org::openscience::cdk::AtomContainer
org::openscience::cdk::AtomContainer::AtomIterator
org::openscience::cdk::AtomContainer::BondIterator
org::openscience::cdk::AtomContainer::ElectronContainerIterator
org::openscience::cdk::AtomContainer::LonePairIterator
org::openscience::cdk::AtomContainer::SingleElectronIterator
org::openscience::cdk::graph::AtomContainerAtomPermutor
org::openscience::cdk::graph::AtomContainerBondPermutor
org::openscience::cdk::tools::manipulator::AtomContainerComparator
org::openscience::cdk::applications::swing::editor::AtomContainerEditor
org::openscience::cdk::tools::manipulator::AtomContainerManipulator
org::openscience::cdk::graph::AtomContainerPermutor
org::openscience::cdk::AtomContainerSet
org::openscience::cdk::AtomContainerSet::AtomContainerIterator
org::openscience::cdk::tools::manipulator::AtomContainerSetManipulator
org::openscience::cdk::qsar::descriptors::molecular::AtomCountDescriptor
org::openscience::cdk::qsar::descriptors::atomic::AtomDegreeDescriptor
org::openscience::cdk::applications::swing::editor::AtomEditor
org::openscience::cdk::qsar::descriptors::atomic::AtomHybridizationDescriptor
org::openscience::cdk::qsar::descriptors::atomic::AtomHybridizationVSEPRDescriptor
org::openscience::cdk::isomorphism::matchers::smarts::AtomicNumberAtom
org::openscience::cdk::applications::swing::AtomicTable
org::openscience::cdk::AtomParity
org::openscience::cdk::layout::AtomPlacer
org::openscience::cdk::modeling::builder3d::AtomPlacer3D
org::openscience::cdk::modeling::builder3d::AtomTetrahedralLigandPlacer3D
org::openscience::cdk::geometry::AtomTools
org::openscience::cdk::AtomType
org::openscience::cdk::charges::AtomTypeCharges
org::openscience::cdk::config::AtomTypeFactory
org::openscience::cdk::config::atomtypes::AtomTypeHandler
org::openscience::cdk::tools::manipulator::AtomTypeManipulator
org::openscience::cdk::config::atomtypes::AtomTypeReader
org::openscience::cdk::tools::AtomTypeTools
org::openscience::cdk::qsar::descriptors::atomic::AtomValenceDescriptor
org::openscience::cdk::iupac::parser::AttachedGroup
org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorCharge
org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorMass
org::openscience::cdk::qsar::descriptors::molecular::AutocorrelationDescriptorPolarizability
org::openscience::cdk::validate::BasicValidator
org::openscience::cdk::qsar::descriptors::molecular::BCUTDescriptor
org::openscience::cdk::graph::BFSShortestPath
org::openscience::cdk::io::formats::BGFFormat
net::sf::cdk::tools::bibtex::BibTeXMLEntry
net::sf::cdk::tools::bibtex::BibTeXMLFile
org::openscience::cdk::graph::BiconnectivityInspector
org::openscience::cdk::BioPolymer
org::openscience::cdk::Bond
org::openscience::cdk::Bond::AtomsIterator
org::openscience::cdk::applications::undoredo::BondChangeEdit
org::openscience::cdk::qsar::descriptors::molecular::BondCountDescriptor
org::openscience::cdk::applications::swing::editor::BondEditor
org::openscience::cdk::tools::manipulator::BondManipulator
org::openscience::cdk::qsar::descriptors::bond::BondPartialPiChargeDescriptor
org::openscience::cdk::qsar::descriptors::bond::BondPartialSigmaChargeDescriptor
org::openscience::cdk::qsar::descriptors::bond::BondPartialTChargeDescriptor
org::openscience::cdk::qsar::descriptors::bond::BondSigmaElectronegativityDescriptor
org::openscience::cdk::qsar::descriptors::atomic::BondsToAtomDescriptor
org::openscience::cdk::modeling::forcefield::BondStretching
org::openscience::cdk::geometry::BondTools
org::openscience::cdk::io::setting::BooleanIOSetting
org::openscience::cdk::qsar::result::BooleanResult
org::openscience::cdk::qsar::descriptors::molecular::BPolDescriptor
org::openscience::cdk::isomorphism::matchers::smarts::BracketAtom
org::openscience::cdk::reaction::type::BreakingBondReaction
org::openscience::cdk::tools::BremserOneSphereHOSECodePredictor
org::openscience::cdk::io::formats::BSFormat
org::openscience::cdk::graph::rebond::Bspt
org::openscience::cdk::io::formats::CacaoCartesianFormat
org::openscience::cdk::io::formats::CacaoInternalFormat
org::openscience::cdk::io::formats::CACheFormat
org::openscience::cdk::graph::invariant::CanonicalLabeler
org::openscience::cdk::qsar::descriptors::molecular::CarbonConnectivityOrderOneDescriptor
org::openscience::cdk::qsar::descriptors::molecular::CarbonConnectivityOrderZeroDescriptor
org::openscience::cdk::reaction::type::CarbonylEliminationReaction
org::openscience::cdk::index::CASNumber
org::openscience::cdk::renderer::color::CDK2DAtomColors
org::openscience::cdk::renderer::color::CDKAtomColors
org::openscience::cdk::config::CDKBasedAtomTypeConfigurator
net::sf::cdk::tools::doclets::CDKBugTaglet
net::sf::cdk::tools::doclets::CDKCiteTaglet
org::openscience::cdk::CDKConstants
org::openscience::cdk::io::cml::CDKConvention
org::openscience::cdk::dict::CDKDictionaryReferences
net::sf::cdk::tools::doclets::CDKDictRefTaglet
org::openscience::cdk::exception::CDKException
net::sf::cdk::tools::doclets::CDKModuleTaglet
org::openscience::cdk::applications::plugin::CDKPluginManager
org::openscience::cdk::applications::plugin::CDKPluginManager::PluginDialogAction
org::openscience::cdk::controller::CDKPopupMenu
org::openscience::cdk::io::formats::CDKSourceCodeFormat
org::openscience::cdk::io::CDKSourceCodeWriter
org::openscience::cdk::tools::CDKUtilities
org::openscience::cdk::validate::CDKValidator
org::openscience::cdk::applications::jchempaint::action::ChangeAtomSymbolAction
org::openscience::cdk::applications::undoredo::ChangeAtomSymbolEdit
org::openscience::cdk::applications::undoredo::ChangeChargeEdit
org::openscience::cdk::applications::undoredo::ChangeCoordsEdit
org::openscience::cdk::applications::jchempaint::action::ChangeIsotopeAction
org::openscience::cdk::applications::undoredo::ChangeIsotopeEdit
org::openscience::cdk::libio::md::ChargeGroup
org::openscience::cdk::io::formats::Chem3D_Cartesian_1Format
org::openscience::cdk::io::formats::Chem3D_Cartesian_2Format
org::openscience::cdk::applications::jchempaint::action::ChemAction
org::openscience::cdk::io::formats::ChemDrawFormat
org::openscience::cdk::ChemFile
org::openscience::cdk::ChemFile::ChemSequenceIterator
org::openscience::cdk::tools::manipulator::ChemFileManipulator
org::openscience::cdk::structgen::stochastic::operator::ChemGraph
org::openscience::cdk::ChemModel
org::openscience::cdk::tools::manipulator::ChemModelManipulator
org::openscience::cdk::ChemObject
org::openscience::cdk::event::ChemObjectChangeEvent
org::openscience::cdk::applications::swing::editor::ChemObjectEditor
org::openscience::cdk::applications::jchempaint::dialogs::ChemObjectPropertyDialog
org::openscience::cdk::applications::swing::ChemObjectPropertyEditorTableModel
org::openscience::cdk::applications::swing::ChemObjectTree
org::openscience::cdk::applications::swing::ChemObjectTreeNode
org::openscience::cdk::ChemSequence
org::openscience::cdk::ChemSequence::ChemModelIterator
org::openscience::cdk::tools::manipulator::ChemSequenceManipulator
org::openscience::cdk::io::formats::ChemtoolFormat
org::openscience::cdk::qsar::descriptors::molecular::ChiChainDescriptor
org::openscience::cdk::qsar::descriptors::molecular::ChiClusterDescriptor
org::openscience::cdk::qsar::ChiIndexUtils
org::openscience::cdk::qsar::descriptors::molecular::ChiPathClusterDescriptor
org::openscience::cdk::qsar::descriptors::molecular::ChiPathDescriptor
org::openscience::cdk::isomorphism::matchers::smarts::ChiralityAtom
org::openscience::cdk::io::formats::CIFFormat
org::openscience::cdk::io::CIFReader
org::openscience::cdk::applications::jchempaint::action::CleanupAction
org::openscience::cdk::applications::undoredo::CleanUpEdit
org::openscience::cdk::applications::undoredo::ClearAllEdit
org::openscience::cdk::reaction::type::CleavageBondMultiReaction
org::openscience::cdk::reaction::type::CleavageBondReaction
org::openscience::cdk::applications::jchempaint::action::CloseAction
org::openscience::cdk::math::qm::ClosedShellJob
org::openscience::cdk::io::cml::CMLCoreModule
org::openscience::cdk::io::cml::CMLErrorHandler
org::openscience::cdk::io::formats::CMLFormat
org::openscience::cdk::io::cml::CMLHandler
org::openscience::cdk::io::cml::CMLReactionModule
org::openscience::cdk::io::CMLReader
org::openscience::cdk::io::cml::CMLResolver
org::openscience::cdk::io::formats::CMLRSSFormat
org::openscience::cdk::io::cml::CMLStack
org::openscience::cdk::io::CMLWriter
org::openscience::cdk::qsar::model::R::CNNClassificationModel
org::openscience::cdk::qsar::model::R::CNNClassificationModelFit
org::openscience::cdk::qsar::model::R::CNNClassificationModelPredict
org::openscience::cdk::qsar::model::R::CNNRegressionModel
org::openscience::cdk::qsar::model::R2::CNNRegressionModel
org::openscience::cdk::qsar::model::R::CNNRegressionModelFit
org::openscience::cdk::qsar::model::R::CNNRegressionModelPredict
org::openscience::cdk::qsar::model::R::CNNRegressionModelSummary
org::openscience::cdk::isomorphism::matchers::smarts::ColumnAtom
org::openscience::cdk::math::Complex
org::openscience::cdk::graph::invariant::ConjugatedPiSystemsDetector
org::openscience::cdk::modeling::forcefield::ConjugateGradientMethod
org::openscience::cdk::isomorphism::matchers::smarts::ConnectionCountAtom
org::openscience::cdk::graph::matrix::ConnectionMatrix
org::openscience::cdk::graph::ConnectivityChecker
org::openscience::cdk::controller::Controller2D
org::openscience::cdk::controller::Controller2DModel
org::openscience::cdk::applications::swing::editor::Controller2DModelEditor
org::openscience::cdk::libio::cml::Convertor
org::openscience::cdk::libio::biojava::Convertor
org::openscience::cdk::applications::jchempaint::action::ConvertToAction
org::openscience::cdk::applications::jchempaint::action::ConvertToPseudoAtomAction
org::openscience::cdk::applications::undoredo::ConvertToPseudoAtomEdit
org::openscience::cdk::applications::jchempaint::action::ConvertToRadicalAction
org::openscience::cdk::applications::undoredo::ConvertToRadicalEdit
org::openscience::cdk::applications::jchempaint::action::CopyPasteAction
org::openscience::cdk::qsar::descriptors::atomic::CovalentRadiusDescriptor
org::openscience::cdk::renderer::color::CPKAtomColors
org::openscience::cdk::qsar::descriptors::molecular::CPSADescriptor
org::openscience::cdk::applications::jchempaint::dialogs::CreateCoordinatesForFileDialog
org::openscience::cdk::applications::jchempaint::dialogs::CreateCoordinatesForFileDialog::CreateAction
org::openscience::cdk::applications::jchempaint::action::CreateInChIAction
org::openscience::cdk::applications::jchempaint::action::CreateReactionAction
org::openscience::cdk::applications::jchempaint::action::CreateSmilesAction
org::openscience::cdk::io::formats::CRK2DFormat
org::openscience::cdk::io::formats::CRK3DFormat
org::openscience::cdk::structgen::stochastic::operator::CrossoverMachine
org::openscience::cdk::Crystal
org::openscience::cdk::geometry::CrystalGeometryTools
org::openscience::cdk::io::formats::CrystClustFormat
org::openscience::cdk::io::CrystClustReader
org::openscience::cdk::io::CrystClustWriter
org::openscience::cdk::io::formats::CTXFormat
org::openscience::cdk::io::CTXReader
org::openscience::cdk::ringsearch::cyclebasis::CycleBasis
org::openscience::cdk::internet::DADMLReader
org::openscience::cdk::internet::DADMLResult
org::openscience::cdk::io::formats::DaltonFormat
org::openscience::cdk::tools::DataFeatures
org::openscience::cdk::tools::DataFeaturesTool
org::openscience::cdk::tools::DeAromatizationTool
org::openscience::cdk::debug::DebugAminoAcid
org::openscience::cdk::debug::DebugAtom
org::openscience::cdk::debug::DebugAtomContainer
org::openscience::cdk::debug::DebugAtomContainerSet
org::openscience::cdk::debug::DebugAtomParity
org::openscience::cdk::debug::DebugAtomType
org::openscience::cdk::debug::DebugBioPolymer
org::openscience::cdk::debug::DebugBond
org::openscience::cdk::debug::DebugChemFile
org::openscience::cdk::debug::DebugChemModel
org::openscience::cdk::debug::DebugChemObject
org::openscience::cdk::debug::DebugChemObjectBuilder
org::openscience::cdk::debug::DebugChemSequence
org::openscience::cdk::debug::DebugCrystal
org::openscience::cdk::debug::DebugElectronContainer
org::openscience::cdk::debug::DebugElement
org::openscience::cdk::debug::DebugIsotope
org::openscience::cdk::debug::DebugLonePair
org::openscience::cdk::debug::DebugMapping
org::openscience::cdk::debug::DebugMolecule
org::openscience::cdk::debug::DebugMoleculeSet
org::openscience::cdk::debug::DebugMonomer
org::openscience::cdk::debug::DebugPDBAtom
org::openscience::cdk::debug::DebugPDBMonomer
org::openscience::cdk::debug::DebugPDBPolymer
org::openscience::cdk::debug::DebugPDBStructure
org::openscience::cdk::debug::DebugPolymer
org::openscience::cdk::debug::DebugPseudoAtom
org::openscience::cdk::debug::DebugReaction
org::openscience::cdk::debug::DebugReactionSet
org::openscience::cdk::debug::DebugRing
org::openscience::cdk::debug::DebugRingSet
org::openscience::cdk::debug::DebugSingleElectron
org::openscience::cdk::debug::DebugStrand
org::openscience::cdk::smiles::DeduceBondSystemTool
org::openscience::cdk::DefaultChemObjectBuilder
org::openscience::cdk::io::DefaultChemObjectReader
org::openscience::cdk::io::DefaultChemObjectWriter
org::openscience::cdk::io::iterator::event::DefaultEventChemObjectReader
org::openscience::cdk::io::iterator::DefaultIteratingChemObjectReader
org::openscience::cdk::isomorphism::matchers::smarts::DegreeAtom
org::openscience::cdk::applications::DescriptorCalculator
org::openscience::cdk::qsar::DescriptorEngine
org::openscience::cdk::qsar::DescriptorException
org::openscience::cdk::qsar::DescriptorSpecification
org::openscience::cdk::qsar::DescriptorValue
org::openscience::cdk::applications::jchempaint::DevelStatusBar
org::openscience::cdk::dict::Dictionary
org::openscience::cdk::applications::jchempaint::action::DictionaryAction
org::openscience::cdk::dict::DictionaryDatabase
org::openscience::cdk::applications::jchempaint::dialogs::DictionaryDialog
org::openscience::cdk::dict::DictionaryHandler
org::openscience::cdk::validate::DictionaryValidator
org::openscience::cdk::dict::DictRef
org::openscience::cdk::applications::swing::DictRefEditorTableModel
org::openscience::cdk::reaction::type::DisplacementChargeFromAcceptorReaction
org::openscience::cdk::reaction::type::DisplacementChargeFromDonorReaction
org::openscience::cdk::similarity::DistanceMoment
org::openscience::cdk::qsar::descriptors::atomic::DistanceToAtomDescriptor
org::openscience::cdk::applications::DistLargeInfo
org::openscience::cdk::io::formats::DMol3Format
org::openscience::cdk::io::formats::DOCK5Format
org::openscience::cdk::qsar::result::DoubleArrayResult
org::openscience::cdk::qsar::result::DoubleResult
org::openscience::cdk::applications::jchempaint::DrawingPanel
org::openscience::cdk::qsar::descriptors::molecular::EccentricConnectivityIndexDescriptor
org::openscience::cdk::applications::jchempaint::action::EditAction
org::openscience::cdk::applications::jchempaint::action::EditAtomContainerPropsAction
org::openscience::cdk::applications::jchempaint::action::EditChemObjectPropsAction
org::openscience::cdk::applications::jchempaint::dialogs::EditDictRefs
org::openscience::cdk::applications::jchempaint::action::EditDictRefsAction
org::openscience::cdk::qsar::descriptors::atomic::EffectiveAtomPolarizabilityDescriptor
org::openscience::cdk::ElectronContainer
org::openscience::cdk::reaction::type::ElectronImpactNBEReaction
org::openscience::cdk::reaction::type::ElectronImpactPDBReaction
org::openscience::cdk::modeling::forcefield::ElectrostaticInteractions
org::openscience::cdk::Element
org::openscience::cdk::applications::jchempaint::action::ElementAction
org::openscience::cdk::tools::ElementComparator
org::openscience::cdk::config::ElementPTFactory
org::openscience::cdk::config::elements::ElementPTHandler
org::openscience::cdk::config::elements::ElementPTReader
org::openscience::cdk::config::Elements
org::openscience::cdk::dict::Entry
org::openscience::cdk::EnzymeResidueLocator
org::openscience::cdk::structgen::deterministic::EquivalentClassesDeterministicGenerator
org::openscience::cdk::graph::invariant::EquivalentClassPartitioner
org::openscience::cdk::atomtype::EStateAtomTypeMatcher
org::openscience::cdk::applications::demo::EventCMLDemo
org::openscience::cdk::io::iterator::event::EventCMLHandler
org::openscience::cdk::io::iterator::event::EventCMLReader
org::openscience::cdk::applications::jchempaint::action::ExitAction
org::openscience::cdk::isomorphism::matchers::smarts::ExplicitConnectionAtom
org::openscience::cdk::applications::jchempaint::action::ExportAction
org::openscience::cdk::applications::jchempaint::action::ExportCompChemAction
org::openscience::cdk::fingerprint::ExtendedFingerprinter
org::openscience::cdk::io::formats::FenskeHall_ZMatrixFormat
org::openscience::cdk::applications::swing::FieldTablePanel
org::openscience::cdk::ringsearch::FiguerasSSSRFinder
org::openscience::cdk::applications::File2Text
org::openscience::cdk::applications::FileConvertor
org::openscience::cdk::applications::FileFormatGuesser
org::openscience::cdk::fingerprint::Fingerprinter
org::openscience::cdk::applications::FingerPrinter
org::openscience::cdk::fingerprint::FingerprinterTool
org::openscience::cdk::io::formats::FingerprintFormat
org::openscience::cdk::tools::FixedSizeStack
org::openscience::cdk::applications::jchempaint::action::FlipAction
org::openscience::cdk::applications::undoredo::FlipEdit
org::openscience::cdk::modeling::forcefield::ForceField
org::openscience::cdk::modeling::builder3d::ForceFieldConfigurator
org::openscience::cdk::modeling::forcefield::ForceFieldTools
org::openscience::cdk::isomorphism::matchers::smarts::FormalChargeAtom
org::openscience::cdk::tools::FormatStringBuffer
org::openscience::cdk::tools::FormatStringBuffer::Format
org::openscience::cdk::math::FortranFormat
org::openscience::cdk::math::qm::FourierGridBasis
org::openscience::cdk::Fragment
org::openscience::cdk::FragmentAtom
org::openscience::cdk::qsar::descriptors::molecular::FragmentComplexityDescriptor
org::openscience::cdk::io::formats::GamessFormat
org::openscience::cdk::io::GamessReader
org::openscience::cdk::charges::GasteigerMarsiliPartialCharges
org::openscience::cdk::charges::GasteigerPEPEPartialCharges
org::openscience::cdk::io::formats::Gaussian03Format
org::openscience::cdk::io::Gaussian03Reader
org::openscience::cdk::io::formats::Gaussian90Format
org::openscience::cdk::io::formats::Gaussian92Format
org::openscience::cdk::io::formats::Gaussian94Format
org::openscience::cdk::io::formats::Gaussian95Format
org::openscience::cdk::io::formats::Gaussian98Format
org::openscience::cdk::io::Gaussian98Reader
org::openscience::cdk::io::formats::GaussianInputFormat
org::openscience::cdk::io::program::GaussianInputWriter
org::openscience::cdk::math::qm::GaussiansBasis
org::openscience::cdk::applications::jchempaint::dialogs::GeneralFieldEditor
org::openscience::cdk::applications::jchempaint::dialogs::GeneralSettingsEditor
org::openscience::cdk::tools::GenerateFragments
org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator
org::openscience::cdk::structgen::deterministic::GENMDeterministicGenerator::BasicFragment
org::openscience::cdk::modeling::forcefield::GeometricMinimizer
org::openscience::cdk::validate::Geometry3DValidator
org::openscience::cdk::geometry::GeometryTools
org::openscience::cdk::geometry::GeometryToolsInternalCoordinates
org::openscience::cdk::io::formats::GhemicalMMFormat
org::openscience::cdk::io::GhemicalMMReader
org::openscience::cdk::io::formats::GhemicalSPMFormat
org::openscience::cdk::graph::invariant::GIMatrix
org::openscience::cdk::structgen::deterministic::Graph
org::openscience::cdk::fingerprint::GraphOnlyFingerprinter
org::openscience::cdk::applications::swing::GraphRenderer
org::openscience::cdk::renderer::GraphRendererModel
org::openscience::cdk::qsar::descriptors::molecular::GravitationalIndexDescriptor
org::openscience::cdk::tools::GridGenerator
org::openscience::cdk::io::formats::GROMOS96Format
org::openscience::cdk::qsar::descriptors::molecular::HBondAcceptorCountDescriptor
org::openscience::cdk::qsar::descriptors::molecular::HBondDonorCountDescriptor
org::openscience::cdk::applications::jchempaint::action::HelpAction
org::openscience::cdk::applications::jchempaint::dialogs::HelpDialog
org::openscience::cdk::applications::jchempaint::dialogs::HelpDialog::PageLoader
org::openscience::cdk::io::formats::HINFormat
org::openscience::cdk::io::HINReader
org::openscience::cdk::io::HINWriter
org::openscience::cdk::tools::HOSECodeAnalyser
org::openscience::cdk::tools::HOSECodeGenerator
org::openscience::cdk::tools::HOSECodeGenerator::TreeNode
org::openscience::cdk::aromaticity::HueckelAromaticityDetector
org::openscience::cdk::graph::invariant::HuLuIndexTool
org::openscience::cdk::atomtype::HybridizationMatcher
org::openscience::cdk::atomtype::HybridizationStateATMatcher
org::openscience::cdk::tools::HydrogenAdder
org::openscience::cdk::isomorphism::matchers::smarts::HydrogenAtom
org::openscience::cdk::layout::HydrogenPlacer
org::openscience::cdk::reaction::type::HydrogenRearrangementDeltaReaction
org::openscience::cdk::reaction::type::HydrogenRearrangementGammaReaction
org::openscience::cdk::reaction::type::HyperconjugationReaction
org::openscience::cdk::interfaces::IAminoAcid
org::openscience::cdk::interfaces::IAtom
org::openscience::cdk::renderer::color::IAtomColorer
org::openscience::cdk::interfaces::IAtomContainer
org::openscience::cdk::interfaces::IAtomContainerSet
org::openscience::cdk::qsar::IAtomicDescriptor
org::openscience::cdk::qsar::IAtomPairDescriptor
org::openscience::cdk::interfaces::IAtomParity
org::openscience::cdk::interfaces::IAtomType
org::openscience::cdk::config::IAtomTypeConfigurator
org::openscience::cdk::atomtype::IAtomTypeGuesser
org::openscience::cdk::atomtype::IAtomTypeMatcher
org::openscience::cdk::math::qm::IBasis
org::openscience::cdk::interfaces::IBioPolymer
org::openscience::cdk::interfaces::IBond
org::openscience::cdk::qsar::IBondDescriptor
org::openscience::cdk::event::ICDKChangeListener
org::openscience::cdk::applications::plugin::ICDKEditBus
org::openscience::cdk::applications::plugin::ICDKPlugin
org::openscience::cdk::event::ICDKSelectionChangeListener
org::openscience::cdk::interfaces::IChemFile
org::openscience::cdk::io::formats::IChemFormat
org::openscience::cdk::io::formats::IChemFormatMatcher
org::openscience::cdk::interfaces::IChemModel
org::openscience::cdk::interfaces::IChemObject
org::openscience::cdk::interfaces::IChemObjectBuilder
org::openscience::cdk::interfaces::IChemObjectChangeEvent
org::openscience::cdk::io::IChemObjectIO
org::openscience::cdk::io::listener::IChemObjectIOListener
org::openscience::cdk::interfaces::IChemObjectListener
org::openscience::cdk::io::IChemObjectReader
org::openscience::cdk::io::IChemObjectWriter
org::openscience::cdk::interfaces::IChemSequence
org::openscience::cdk::io::cml::ICMLConvention
org::openscience::cdk::libio::cml::ICMLCustomizer
org::openscience::cdk::io::cml::ICMLModule
org::openscience::cdk::interfaces::ICrystal
org::openscience::cdk::tools::IDCreator
org::openscience::cdk::tools::IDeduceBondOrderTool
org::openscience::cdk::qsar::IDescriptor
org::openscience::cdk::qsar::result::IDescriptorResult
org::openscience::cdk::interfaces::IElectronContainer
org::openscience::cdk::interfaces::IElement
org::openscience::cdk::io::iterator::event::IEventChemObjectReader
org::openscience::cdk::fingerprint::IFingerprinter
org::openscience::cdk::math::IFunction
org::openscience::cdk::graph::matrix::IGraphMatrix
org::openscience::cdk::IImplementationSpecification
org::openscience::cdk::interfaces::IIsotope
org::openscience::cdk::io::iterator::IIteratingChemObjectReader
org::openscience::cdk::applications::jchempaint::io::IJCPFileFilter
org::openscience::cdk::interfaces::ILonePair
org::openscience::cdk::interfaces::IMapping
org::openscience::cdk::math::IMatrix
org::openscience::cdk::qsar::model::IModel
org::openscience::cdk::qsar::IMolecularDescriptor
org::openscience::cdk::interfaces::IMolecule
org::openscience::cdk::interfaces::IMoleculeSet
org::openscience::cdk::interfaces::IMonomer
org::openscience::cdk::isomorphism::matchers::smarts::ImplicitHCountAtom
org::openscience::cdk::io::inchi::INChIContentProcessorTool
org::openscience::cdk::io::formats::INChIFormat
org::openscience::cdk::inchi::InChIGenerator
org::openscience::cdk::inchi::InChIGeneratorFactory
org::openscience::cdk::io::inchi::INChIHandler
org::openscience::cdk::io::formats::INChIPlainTextFormat
org::openscience::cdk::io::INChIPlainTextReader
org::openscience::cdk::io::INChIReader
org::openscience::cdk::inchi::InChIToStructure
org::openscience::cdk::exception::IncorrectUseOfCDKCoreClassError
org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicHardnessDescriptor
org::openscience::cdk::qsar::descriptors::atomic::InductiveAtomicSoftnessDescriptor
org::openscience::cdk::charges::InductivePartialCharges
org::openscience::cdk::applications::jchempaint::dialogs::InfoDialog
org::openscience::cdk::applications::jchempaint::action::InsertSmilesAction
org::openscience::cdk::applications::jchempaint::action::InsertStructureAction
org::openscience::cdk::applications::jchempaint::InsertTextPanel
org::openscience::cdk::qsar::result::IntegerArrayResult
org::openscience::cdk::io::setting::IntegerIOSetting
org::openscience::cdk::qsar::result::IntegerResult
org::openscience::cdk::smiles::InterruptableSmilesParser
org::openscience::cdk::exception::InvalidSmilesException
org::openscience::cdk::isomorphism::matchers::InverseSymbolSetQueryAtom
org::openscience::cdk::smiles::InvPair
org::openscience::cdk::io::setting::IOSetting
org::openscience::cdk::qsar::descriptors::atomic::IPAtomicDescriptor
org::openscience::cdk::qsar::descriptors::bond::IPBondDescriptor
org::openscience::cdk::interfaces::IPDBAtom
org::openscience::cdk::interfaces::IPDBMonomer
org::openscience::cdk::interfaces::IPDBPolymer
org::openscience::cdk::interfaces::IPDBStructure
org::openscience::cdk::qsar::descriptors::molecular::IPMolecularDescriptor
org::openscience::cdk::interfaces::IPolymer
org::openscience::cdk::modeling::forcefield::IPotentialFunction
org::openscience::cdk::interfaces::IPseudoAtom
org::openscience::cdk::isomorphism::matchers::IQueryAtom
org::openscience::cdk::isomorphism::matchers::IQueryAtomContainer
org::openscience::cdk::isomorphism::matchers::IQueryBond
org::openscience::cdk::geometry::IRDFWeightFunction
org::openscience::cdk::interfaces::IReaction
org::openscience::cdk::reaction::IReactionProcess
org::openscience::cdk::interfaces::IReactionSet
org::openscience::cdk::io::listener::IReaderListener
org::openscience::cdk::renderer::IRenderer2D
org::openscience::cdk::io::formats::IResourceFormat
org::openscience::cdk::interfaces::IRing
org::openscience::cdk::interfaces::IRingSet
org::openscience::cdk::renderer::ISimpleRenderer2D
org::openscience::cdk::interfaces::ISingleElectron
org::openscience::cdk::templates::saturatedhydrocarbons::IsoAlkanes
org::openscience::cdk::isomorphism::IsomorphismTester
org::openscience::cdk::Isotope
org::openscience::cdk::config::IsotopeFactory
org::openscience::cdk::tools::IsotopeGenerator
org::openscience::cdk::config::isotopes::IsotopeHandler
org::openscience::cdk::config::isotopes::IsotopeReader
org::openscience::cdk::qsar::descriptors::atomic::IsProtonInAromaticSystemDescriptor
org::openscience::cdk::qsar::descriptors::atomic::IsProtonInConjugatedPiSystemDescriptor
org::openscience::cdk::interfaces::IStrand
org::openscience::cdk::structgen::IStructureGenerationListener
org::openscience::cdk::io::iterator::IteratingMDLReader
org::openscience::cdk::io::iterator::IteratingSMILESReader
org::openscience::cdk::applications::undoredo::IUndoRedoHandler
org::openscience::cdk::tools::IValencyChecker
org::openscience::cdk::validate::IValidator
org::openscience::cdk::qsar::model::weka::IWekaModel
org::openscience::cdk::io::listener::IWriterListener
org::openscience::cdk::io::formats::JaguarFormat
org::openscience::cdk::applications::jchempaint::application::JChemPaint
org::openscience::cdk::applications::jchempaint::applet::JChemPaintAbstractApplet
org::openscience::cdk::applications::jchempaint::applet::JChemPaintEditorApplet
org::openscience::cdk::applications::jchempaint::JChemPaintEditorPanel
org::openscience::cdk::applications::jchempaint::JChemPaintMenuBar
org::openscience::cdk::applications::jchempaint::JChemPaintModel
org::openscience::cdk::applications::jchempaint::dialogs::JChemPaintModelPropsEditor
org::openscience::cdk::applications::jchempaint::JChemPaintPanel
org::openscience::cdk::applications::jchempaint::JChemPaintPanel::AppCloser
org::openscience::cdk::applications::jchempaint::JChemPaintPanel::PopupListener
org::openscience::cdk::applications::jchempaint::JChemPaintPopupMenu
org::openscience::cdk::applications::jchempaint::applet::JChemPaintViewerOnlyApplet
org::openscience::cdk::applications::jchempaint::JChemPaintViewerOnlyPanel
org::openscience::cdk::applications::jchempaint::action::JCPAction
org::openscience::cdk::applications::jchempaint::io::JCPCompChemInputSaveFileFilter
org::openscience::cdk::applications::jchempaint::JCPConstants
org::openscience::cdk::applications::jchempaint::io::JCPExportFileFilter
org::openscience::cdk::applications::jchempaint::io::JCPFileFilter
org::openscience::cdk::applications::jchempaint::io::JCPFileView
org::openscience::cdk::applications::jchempaint::JCPLocalizationHandler
org::openscience::cdk::applications::jchempaint::JCPPropertyHandler
org::openscience::cdk::applications::jchempaint::io::JCPSaveFileFilter
org::openscience::cdk::applications::jchempaint::dnd::JCPTransferHandler
org::openscience::cdk::applications::undoredo::JCPUndoRedoHandler
org::openscience::cdk::applications::swing::JExternalFrame
org::openscience::cdk::io::formats::JMEFormat
org::openscience::cdk::io::cml::JMOLANIMATIONConvention
org::openscience::cdk::geometry::alignment::KabschAlignment
org::openscience::cdk::qsar::descriptors::molecular::KappaShapeIndicesDescriptor
org::openscience::cdk::qsar::descriptors::molecular::LargestChainDescriptor
org::openscience::cdk::qsar::descriptors::molecular::LargestPiSystemDescriptor
org::openscience::cdk::qsar::descriptors::molecular::LengthOverBreadthDescriptor
org::openscience::cdk::applications::jchempaint::action::LicenseAction
org::openscience::cdk::applications::jchempaint::dialogs::LicenseDialog
org::openscience::cdk::qsar::model::R::LinearRegressionModel
org::openscience::cdk::qsar::model::R2::LinearRegressionModel
org::openscience::cdk::qsar::model::R::LinearRegressionModelFit
org::openscience::cdk::qsar::model::R::LinearRegressionModelPredict
org::openscience::cdk::qsar::model::R::LinearRegressionModelSummary
org::openscience::cdk::modeling::forcefield::LineSearch
org::openscience::cdk::modeling::forcefield::LineSearchForTheWolfeConditions
org::openscience::cdk::applications::swing::ListeningTableModel
org::openscience::cdk::tools::LoggingTool
org::openscience::cdk::isomorphism::matchers::smarts::LogicalOperatorAtom
org::openscience::cdk::isomorphism::matchers::smarts::LogicalOperatorBond
org::openscience::cdk::LonePair
org::openscience::cdk::tools::LonePairElectronChecker
org::openscience::cdk::qsar::descriptors::molecular::LongestAliphaticChainDescriptor
org::openscience::cdk::io::formats::MACiEFormat
org::openscience::cdk::io::MACiEReader
org::openscience::cdk::io::formats::MacroModelFormat
net::sf::cdk::tools::MakeJavafilesFiles
net::sf::cdk::tools::MakeRequiresfilesFiles
org::openscience::cdk::Mapping
org::openscience::cdk::Mapping::ChemObjectIterator
org::openscience::cdk::isomorphism::matchers::smarts::MassAtom
org::openscience::cdk::math::MathTools
org::openscience::cdk::math::Matrix
org::openscience::cdk::qsar::descriptors::molecular::MDEDescriptor
org::openscience::cdk::io::formats::MDLFormat
org::openscience::cdk::io::cml::MDLMolConvention
org::openscience::cdk::io::MDLReader
org::openscience::cdk::io::formats::MDLRXNFormat
org::openscience::cdk::io::MDLRXNReader
org::openscience::cdk::io::MDLRXNV2000Reader
org::openscience::cdk::io::formats::MDLRXNV3000Format
org::openscience::cdk::io::MDLRXNV3000Reader
org::openscience::cdk::io::MDLRXNWriter
org::openscience::cdk::io::formats::MDLV2000Format
org::openscience::cdk::io::MDLV2000Reader
org::openscience::cdk::io::formats::MDLV3000Format
org::openscience::cdk::io::MDLV3000Reader
org::openscience::cdk::io::MDLWriter
org::openscience::cdk::libio::md::MDMolecule
org::openscience::cdk::io::cml::MDMoleculeConvention
org::openscience::cdk::libio::cml::MDMoleculeCustomizer
org::openscience::cdk::applications::jchempaint::action::MenuBarAction
org::openscience::cdk::applications::undoredo::MergeMoleculesEdit
org::openscience::cdk::tools::MFAnalyser
org::openscience::cdk::graph::MinimalPathIterator
org::openscience::cdk::atomtype::MM2AtomTypeMatcher
org::openscience::cdk::modeling::builder3d::MM2BasedAtomTypePattern
org::openscience::cdk::modeling::builder3d::MM2BasedParameterSetReader
org::openscience::cdk::atomtype::MMFF94AtomTypeMatcher
org::openscience::cdk::modeling::builder3d::MMFF94BasedAtomTypePattern
org::openscience::cdk::modeling::builder3d::MMFF94BasedParameterSetReader
org::openscience::cdk::modeling::forcefield::MMFF94EnergyFunction
org::openscience::cdk::modeling::builder3d::MMFF94ParametersCall
org::openscience::cdk::charges::MMFF94PartialCharges
org::openscience::cdk::io::formats::MMODFormat
org::openscience::cdk::modeling::builder3d::ModelBuilder3D
org::openscience::cdk::applications::jchempaint::action::ModelPropsAction
org::openscience::cdk::applications::jchempaint::action::ModifyDisplaySettingsAction
org::openscience::cdk::applications::jchempaint::action::ModifyGeneralSettingsAction
org::openscience::cdk::applications::jchempaint::dialogs::ModifyGeneralSettingsDialog
org::openscience::cdk::applications::jchempaint::dialogs::ModifyRenderOptionsDialog
org::openscience::cdk::io::formats::Mol2Format
org::openscience::cdk::io::Mol2Reader
org::openscience::cdk::io::Mol2Writer
org::openscience::cdk::Molecule
org::openscience::cdk::iupac::parser::MoleculeBuilder
org::openscience::cdk::templates::MoleculeFactory
org::openscience::cdk::tools::features::MoleculeFeaturesTool
org::openscience::cdk::graph::MoleculeGraphs
org::openscience::cdk::applications::swing::MoleculeListPanel
org::openscience::cdk::applications::swing::MoleculeListPanel::StrucContainer
org::openscience::cdk::applications::swing::MoleculeListViewer
org::openscience::cdk::MoleculeSet
org::openscience::cdk::tools::manipulator::MoleculeSetManipulator
org::openscience::cdk::applications::swing::MoleculesTable
org::openscience::cdk::applications::swing::MoleculeViewer2D
org::openscience::cdk::applications::swing::MoleculeViewer2DPanel
org::openscience::cdk::qsar::descriptors::molecular::MomentOfInertiaDescriptor
org::openscience::cdk::Monomer
org::openscience::cdk::io::formats::MOPAC2002Format
org::openscience::cdk::io::formats::MOPAC7Format
org::openscience::cdk::io::formats::MOPAC93Format
org::openscience::cdk::io::formats::MOPAC97Format
org::openscience::cdk::graph::invariant::MorganNumbersTools
org::openscience::cdk::applications::undoredo::MoveAtomEdit
org::openscience::cdk::io::formats::MPQCFormat
org::openscience::cdk::geometry::surface::NeighborList
org::openscience::cdk::applications::jchempaint::action::NewAction
org::openscience::cdk::modeling::forcefield::NewtonRaphsonMethod
org::openscience::cdk::nonotify::NNAminoAcid
org::openscience::cdk::nonotify::NNAtom
org::openscience::cdk::nonotify::NNAtomContainer
org::openscience::cdk::nonotify::NNAtomContainerSet
org::openscience::cdk::nonotify::NNAtomParity
org::openscience::cdk::nonotify::NNAtomType
org::openscience::cdk::nonotify::NNBioPolymer
org::openscience::cdk::nonotify::NNBond
org::openscience::cdk::nonotify::NNChemFile
org::openscience::cdk::nonotify::NNChemModel
org::openscience::cdk::nonotify::NNChemObject
org::openscience::cdk::nonotify::NNChemSequence
org::openscience::cdk::nonotify::NNCrystal
org::openscience::cdk::nonotify::NNElectronContainer
org::openscience::cdk::nonotify::NNElement
org::openscience::cdk::nonotify::NNIsotope
org::openscience::cdk::nonotify::NNLonePair
org::openscience::cdk::nonotify::NNMapping
org::openscience::cdk::nonotify::NNMolecule
org::openscience::cdk::nonotify::NNMoleculeSet
org::openscience::cdk::nonotify::NNMonomer
org::openscience::cdk::nonotify::NNPDBAtom
org::openscience::cdk::nonotify::NNPDBMonomer
org::openscience::cdk::nonotify::NNPDBPolymer
org::openscience::cdk::nonotify::NNPDBStructure
org::openscience::cdk::nonotify::NNPolymer
org::openscience::cdk::nonotify::NNPseudoAtom
org::openscience::cdk::nonotify::NNReaction
org::openscience::cdk::nonotify::NNReactionSet
org::openscience::cdk::nonotify::NNRing
org::openscience::cdk::nonotify::NNRingSet
org::openscience::cdk::nonotify::NNSingleElectron
org::openscience::cdk::nonotify::NNStrand
org::openscience::cdk::iupac::parser::NomParser
org::openscience::cdk::nonotify::NoNotificationChemObjectBuilder
org::openscience::cdk::tools::Normalizer
org::openscience::cdk::exception::NoSuchAtomException
org::openscience::cdk::exception::NoSuchAtomTypeException
org::openscience::cdk::geometry::surface::NumericalSurface
org::openscience::cdk::io::formats::NWChemFormat
org::openscience::cdk::math::qm::OneElectronJob
org::openscience::cdk::applications::jchempaint::action::OpenAction
org::openscience::cdk::libio::openbabel::OpenBabelConvert
org::openscience::cdk::isomorphism::matchers::smarts::OperatorContainer
org::openscience::cdk::io::setting::OptionIOSetting
org::openscience::cdk::math::qm::Orbitals
org::openscience::cdk::isomorphism::matchers::OrderQueryBond
org::openscience::cdk::isomorphism::matchers::smarts::OrderQueryBond
org::openscience::cdk::layout::OverlapResolver
org::openscience::cdk::layout::OverlapResolver::OverlapPair
org::openscience::cdk::dict::OWLFile
org::openscience::cdk::iupac::parser::ParseException
org::openscience::cdk::renderer::color::PartialAtomicChargeColors
org::openscience::cdk::structgen::stochastic::PartialFilledStructureMerger
org::openscience::cdk::qsar::descriptors::atomic::PartialPiChargeDescriptor
org::openscience::cdk::qsar::descriptors::atomic::PartialSigmaChargeDescriptor
org::openscience::cdk::qsar::descriptors::atomic::PartialTChargeMMFF94Descriptor
org::openscience::cdk::qsar::descriptors::atomic::PartialTChargePEOEDescriptor
org::openscience::cdk::ringsearch::Path
org::openscience::cdk::graph::PathTools
org::openscience::cdk::io::PCCompoundASNReader
org::openscience::cdk::io::formats::PCModelFormat
org::openscience::cdk::protein::data::PDBAtom
org::openscience::cdk::libio::cml::PDBAtomCustomizer
org::openscience::cdk::io::cml::PDBConvention
org::openscience::cdk::io::formats::PDBFormat
org::openscience::cdk::io::formats::PDBMLFormat
org::openscience::cdk::protein::data::PDBMonomer
org::openscience::cdk::protein::data::PDBPolymer
org::openscience::cdk::io::PDBReader
org::openscience::cdk::protein::data::PDBStrand
org::openscience::cdk::protein::data::PDBStructure
org::openscience::cdk::validate::PDBValidator
org::openscience::cdk::io::PDBWriter
org::openscience::cdk::applications::jchempaint::action::PerceiveAtomTypesAction
org::openscience::cdk::PeriodicTableElement
org::openscience::cdk::applications::swing::PeriodicTablePanel
org::openscience::cdk::applications::swing::PeriodicTablePanel::BackAction
org::openscience::cdk::applications::swing::PeriodicTablePanel::ElementButtonAction
org::openscience::cdk::qsar::descriptors::atomic::PeriodicTablePositionDescriptor
org::openscience::cdk::qsar::descriptors::molecular::PetitjeanNumberDescriptor
org::openscience::cdk::qsar::descriptors::molecular::PetitjeanShapeIndexDescriptor
org::openscience::cdk::PhysicalConstants
org::openscience::cdk::qsar::descriptors::atompair::PiContactDetectionDescriptor
org::openscience::cdk::qsar::descriptors::atomic::PiElectronegativityDescriptor
org::openscience::cdk::qsar::model::R::PLSRegressionModel
org::openscience::cdk::qsar::model::R::PLSRegressionModelPredict
org::openscience::cdk::applications::plugin::PluginClassLoader
org::openscience::cdk::io::formats::PMPFormat
org::openscience::cdk::io::PMPReader
org::openscience::cdk::graph::rebond::Point
org::openscience::cdk::charges::Polarizability
org::openscience::cdk::Polymer
org::openscience::cdk::controller::PopupController2D
org::openscience::cdk::io::formats::POVRayFormat
org::openscience::cdk::io::formats::PQSChemFormat
org::openscience::cdk::applications::jchempaint::action::PreferencesAction
org::openscience::cdk::math::Primes
org::openscience::cdk::applications::jchempaint::action::PrintAction
org::openscience::cdk::validate::ProblemMarker
org::openscience::cdk::geometry::Projector
org::openscience::cdk::io::listener::PropertiesListener
org::openscience::cdk::tools::ProteinBuilderTool
org::openscience::cdk::protein::ProteinPocketFinder
org::openscience::cdk::qsar::descriptors::atomic::ProtonTotalPartialChargeDescriptor
org::openscience::cdk::PseudoAtom
org::openscience::cdk::applications::swing::editor::PseudoAtomEditor
org::openscience::cdk::applications::jchempaint::dialogs::PTDialog
org::openscience::cdk::io::formats::PubChemASNFormat
org::openscience::cdk::io::formats::PubChemFormat
org::openscience::cdk::io::formats::QChemFormat
org::openscience::cdk::io::cml::QSARConvention
org::openscience::cdk::libio::cml::QSARCustomizer
org::openscience::cdk::qsar::model::QSARModelException
org::openscience::cdk::math::Quaternion
org::openscience::cdk::isomorphism::matchers::QueryAtomContainer
org::openscience::cdk::isomorphism::matchers::QueryAtomContainerCreator
org::openscience::cdk::ringsearch::Queue
org::openscience::cdk::reaction::type::RadicalSiteInitiationHReaction
org::openscience::cdk::reaction::type::RadicalSiteInitiationReaction
org::openscience::cdk::structgen::RandomGenerator
org::openscience::cdk::math::RandomNumbersTool
org::openscience::cdk::io::formats::RawCopyFormat
org::openscience::cdk::geometry::RDFCalculator
org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_G3R
org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GDR
org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GHR
org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GHR_topol
org::openscience::cdk::qsar::descriptors::atomic::RDFProtonDescriptor_GSR
org::openscience::cdk::Reaction
org::openscience::cdk::Reaction::MappingIterator
org::openscience::cdk::applications::swing::editor::ReactionEditor
org::openscience::cdk::tools::manipulator::ReactionManipulator
org::openscience::cdk::ReactionSet
org::openscience::cdk::ReactionSet::ReactionIterator
org::openscience::cdk::tools::manipulator::ReactionSetManipulator
org::openscience::cdk::reaction::ReactionSpecification
org::openscience::cdk::io::ReaderEvent
org::openscience::cdk::io::ReaderFactory
org::openscience::cdk::reaction::type::RearrangementAnion1Reaction
org::openscience::cdk::reaction::type::RearrangementAnion2Reaction
org::openscience::cdk::reaction::type::RearrangementAnion3Reaction
org::openscience::cdk::reaction::type::RearrangementCation1Reaction
org::openscience::cdk::reaction::type::RearrangementCation2Reaction
org::openscience::cdk::reaction::type::RearrangementCation3Reaction
org::openscience::cdk::reaction::type::RearrangementRadical1Reaction
org::openscience::cdk::reaction::type::RearrangementRadical2Reaction
org::openscience::cdk::reaction::type::RearrangementRadical3Reaction
org::openscience::cdk::graph::rebond::RebondTool
org::openscience::cdk::isomorphism::matchers::smarts::RecurseAtom
org::openscience::cdk::isomorphism::matchers::smarts::RecursiveSmartsAtom
org::openscience::cdk::applications::jchempaint::action::RedoAction
org::openscience::cdk::applications::undoredo::RemoveAtomsAndBondsEdit
org::openscience::cdk::renderer::Renderer2D
org::openscience::cdk::renderer::Renderer2DModel
org::openscience::cdk::applications::swing::editor::Renderer2DModelEditor
org::openscience::cdk::libio::md::Residue
org::openscience::cdk::qsar::descriptors::bond::ResonancePositiveChargeDescriptor
org::openscience::cdk::isomorphism::mcss::RGraph
org::openscience::cdk::Ring
org::openscience::cdk::isomorphism::matchers::smarts::RingAtom
org::openscience::cdk::isomorphism::matchers::smarts::RingBond
org::openscience::cdk::isomorphism::matchers::smarts::RingIdentifierAtom
org::openscience::cdk::isomorphism::matchers::smarts::RingMembershipAtom
org::openscience::cdk::ringsearch::RingPartitioner
org::openscience::cdk::layout::RingPlacer
org::openscience::cdk::RingSet
org::openscience::cdk::tools::manipulator::RingSetManipulator
org::openscience::cdk::tools::manipulator::RingSizeComparator
org::openscience::cdk::isomorphism::mcss::RMap
org::openscience::cdk::qsar::model::R::RModel
org::openscience::cdk::qsar::model::R2::RModel
org::openscience::cdk::isomorphism::mcss::RNode
org::openscience::cdk::qsar::descriptors::molecular::RotatableBondsCountDescriptor
org::openscience::cdk::io::RssWriter
org::openscience::cdk::qsar::descriptors::molecular::RuleOfFiveDescriptor
org::openscience::cdk::tools::SaturationChecker
org::openscience::cdk::applications::jchempaint::action::SaveAction
org::openscience::cdk::applications::jchempaint::action::SaveAsAction
org::openscience::cdk::io::formats::SDFFormat
org::openscience::cdk::applications::SDFSubstructureFinder
org::openscience::cdk::applications::jchempaint::action::SetColorSchemeAction
org::openscience::cdk::io::formats::ShelXFormat
org::openscience::cdk::io::ShelXReader
org::openscience::cdk::io::ShelXWriter
org::openscience::cdk::applications::jchempaint::action::ShowChemObjectDumpAction
org::openscience::cdk::applications::jchempaint::action::ShowChemObjectProperty
org::openscience::cdk::applications::jchempaint::action::ShowDictionariesAction
org::openscience::cdk::qsar::descriptors::atomic::SigmaElectronegativityDescriptor
org::openscience::cdk::math::qm::SimpleBasisSet
org::openscience::cdk::iupac::parser::SimpleCharStream
org::openscience::cdk::controller::SimpleController2D
org::openscience::cdk::ringsearch::cyclebasis::SimpleCycle
org::openscience::cdk::ringsearch::cyclebasis::SimpleCycleBasis
org::openscience::cdk::renderer::SimpleRenderer2D
org::openscience::cdk::SingleElectron
org::openscience::cdk::structgen::SingleStructureRandomGenerator
org::openscience::cdk::isomorphism::matchers::smarts::SmallestRingAtom
org::openscience::cdk::isomorphism::matchers::smarts::SMARTSAtom
org::openscience::cdk::isomorphism::matchers::smarts::SMARTSBond
org::openscience::cdk::io::formats::SMARTSFormat
org::openscience::cdk::isomorphism::matchers::smarts::SMARTSOperatorAtom
org::openscience::cdk::io::formats::SMILESFIXFormat
org::openscience::cdk::io::formats::SMILESFormat
org::openscience::cdk::smiles::SmilesGenerator
org::openscience::cdk::smiles::SmilesParser
org::openscience::cdk::io::SMILESReader
org::openscience::cdk::tools::SmilesValencyChecker
org::openscience::cdk::applications::demo::SmilesViewerforDeterministicGenerator
org::openscience::cdk::io::SMILESWriter
org::openscience::cdk::modeling::forcefield::SmoothingFunctions
org::openscience::cdk::applications::swing::SortedTableModel
org::openscience::cdk::graph::SpanningTree
org::openscience::cdk::io::formats::SpartanFormat
org::openscience::cdk::ringsearch::SSSRFinder
org::openscience::cdk::fingerprint::StandardSubstructureSets
org::openscience::cdk::applications::jchempaint::StatusBar
org::openscience::cdk::applications::jchempaint::action::StatusBarAction
org::openscience::cdk::modeling::forcefield::SteepestDescentsMethod
org::openscience::cdk::isomorphism::matchers::smarts::StereoBond
org::openscience::cdk::Strand
org::openscience::cdk::modeling::forcefield::StretchBendInteractions
org::openscience::cdk::applications::jchempaint::StringHelper
org::openscience::cdk::io::setting::StringIOSetting
org::openscience::cdk::atomtype::StructGenAtomTypeGuesser
org::openscience::cdk::atomtype::StructGenMatcher
org::openscience::cdk::layout::StructureDiagramGenerator
org::openscience::cdk::tools::StructureResonanceGenerator
org::openscience::cdk::fingerprint::SubstructureFingerprinter
org::openscience::cdk::io::formats::SVGFormat
org::openscience::cdk::io::SVGWriter
org::openscience::cdk::io::listener::SwingGUIListener
org::openscience::cdk::tools::SwissArmyKnife
org::openscience::cdk::io::formats::SybylDescriptorFormat
org::openscience::cdk::isomorphism::matchers::SymbolAndChargeQueryAtom
org::openscience::cdk::isomorphism::matchers::SymbolChargeIDQueryAtom
org::openscience::cdk::isomorphism::matchers::SymbolQueryAtom
org::openscience::cdk::config::Symbols
org::openscience::cdk::isomorphism::matchers::SymbolSetQueryAtom
org::openscience::cdk::qsar::descriptors::molecular::TaeAminoAcidDescriptor
org::openscience::cdk::similarity::Tanimoto
org::openscience::cdk::applications::TanimotoCoefficient
org::openscience::cdk::modeling::builder3d::TemplateExtractor
org::openscience::cdk::layout::TemplateHandler
org::openscience::cdk::modeling::builder3d::TemplateHandler3D
org::openscience::cdk::geometry::surface::Tessellate
org::openscience::cdk::io::listener::TextGUIListener
org::openscience::cdk::applications::jchempaint::dialogs::TextViewDialog
org::openscience::cdk::io::formats::TinkerMM2Format
org::openscience::cdk::io::formats::TinkerXYZFormat
org::openscience::cdk::iupac::parser::Token
org::openscience::cdk::applications::jchempaint::action::ToolBarAction
org::openscience::cdk::applications::jchempaint::ToolBarMaker
org::openscience::cdk::graph::matrix::TopologicalMatrix
org::openscience::cdk::modeling::forcefield::Torsions
org::openscience::cdk::isomorphism::matchers::smarts::TotalConnectionAtom
org::openscience::cdk::isomorphism::matchers::smarts::TotalHCountAtom
org::openscience::cdk::isomorphism::matchers::smarts::TotalRingConnectionAtom
org::openscience::cdk::isomorphism::matchers::smarts::TotalValencyAtom
org::openscience::cdk::qsar::descriptors::molecular::TPSADescriptor
org::openscience::cdk::geometry::surface::Triangle
org::openscience::cdk::io::formats::TurboMoleFormat
org::openscience::cdk::config::TXTBasedAtomTypeConfigurator
org::openscience::cdk::applications::jchempaint::action::UndoAction
org::openscience::cdk::applications::undoredo::UndoAdapter
org::openscience::cdk::applications::jchempaint::UndoStack
org::openscience::cdk::io::formats::UniChemXYZFormat
org::openscience::cdk::isomorphism::UniversalIsomorphismTester
org::openscience::cdk::exception::UnsupportedChemObjectException
org::openscience::cdk::qsar::model::R::V2M
org::openscience::cdk::qsar::descriptors::molecular::VAdjMaDescriptor
org::openscience::cdk::qsar::descriptors::molecular::ValenceCarbonConnectivityOrderOneDescriptor
org::openscience::cdk::qsar::descriptors::molecular::ValenceCarbonConnectivityOrderZeroDescriptor
org::openscience::cdk::tools::ValencyChecker
org::openscience::cdk::tools::ValencyHybridChecker
org::openscience::cdk::atomtype::ValencyMatcher
org::openscience::cdk::validate::ValencyValidator
org::openscience::cdk::applications::jchempaint::action::ValidateAction
org::openscience::cdk::applications::jchempaint::dialogs::ValidateFrame
org::openscience::cdk::validate::ValidationReport
org::openscience::cdk::validate::ValidationTest
org::openscience::cdk::applications::Validator
org::openscience::cdk::validate::ValidatorEngine
org::openscience::cdk::modeling::forcefield::VanDerWaalsInteractions
org::openscience::cdk::io::formats::VASPFormat
org::openscience::cdk::io::VASPReader
org::openscience::cdk::qsar::descriptors::atomic::VdWRadiusDescriptor
org::openscience::cdk::math::Vector
org::openscience::cdk::Vibration
org::openscience::cdk::structgen::VicinitySampler
org::openscience::cdk::io::formats::ViewmolFormat
org::openscience::cdk::applications::jchempaint::dialogs::WebDialog
org::openscience::cdk::applications::jchempaint::dialogs::WebDialog::PageLoader
org::openscience::cdk::applications::jchempaint::action::WebLinkAction
org::openscience::cdk::qsar::descriptors::molecular::WeightDescriptor
org::openscience::cdk::qsar::descriptors::molecular::WeightedPathDescriptor
org::openscience::cdk::qsar::descriptors::molecular::WHIMDescriptor
org::openscience::cdk::qsar::descriptors::molecular::WienerNumbersDescriptor
org::openscience::cdk::io::WriterFactory
org::openscience::cdk::internet::WWMMatrixReader
org::openscience::cdk::io::formats::XEDFormat
org::openscience::cdk::database::XindiceReader
org::openscience::cdk::qsar::descriptors::molecular::XLogPDescriptor
org::openscience::cdk::io::formats::XYZFormat
org::openscience::cdk::io::XYZReader
org::openscience::cdk::io::XYZWriter
org::openscience::cdk::io::formats::YasaraFormat
org::openscience::cdk::qsar::descriptors::molecular::ZagrebIndexDescriptor
org::openscience::cdk::io::formats::ZindoFormat
org::openscience::cdk::io::formats::ZMatrixFormat
org::openscience::cdk::io::ZMatrixReader
org::openscience::cdk::geometry::ZMatrixTools
org::openscience::cdk::applications::jchempaint::action::ZoomAction

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